ProteinInference new parameter.

bigbio · Dec 20, 2024 · b45716a · b45716a
1 parent a2e4a66
commit b45716a
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/local/openms/proteininference/main.nf b/modules/local/openms/proteininference/main.nf
@@ -29,6 +29,7 @@ process PROTEININFERENCE {
         -protein_fdr true \\
         -Algorithm:use_shared_peptides $params.use_shared_peptides \\
         -Algorithm:annotate_indistinguishable_groups $groups \\
+        -Algorithm:score_type "PEP" \\
         $gg \\
         -Algorithm:score_aggregation_method $params.protein_score \\
         -Algorithm:min_peptides_per_protein $params.min_peptides_per_protein \\