update template 3.0.2

bigbio · Oct 18, 2024 · 75b2059 · 75b2059
1 parent cb77002
commit 75b2059
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diff --git a/modules/local/pmultiqc/main.nf b/modules/local/pmultiqc/main.nf
@@ -31,10 +31,8 @@ process PMULTIQC {
     # leaving here to ease debugging
     ls -lcth *
 
-    echo ">>>>>>>>> Experimental Design <<<<<<<<<"
     cat results/*openms_design.tsv
 
-    echo ">>>>>>>>> Running Multiqc <<<<<<<<<"
     multiqc \\
         -f \\
         --config ./results/multiqc_config.yml \\

diff --git a/subworkflows/local/dda_id.nf b/subworkflows/local/dda_id.nf
@@ -1,7 +1,6 @@
 //
 // MODULE: Local to the pipeline
 //
-include { DECOYDATABASE } from '../../modules/local/openms/decoydatabase/main'
 include { CONSENSUSID   } from '../../modules/local/openms/consensusid/main'
 include { EXTRACTPSMFEATURES } from '../../modules/local/openms/extractpsmfeatures/main'
 include { PERCOLATOR         } from '../../modules/local/openms/thirdparty/percolator/main'

diff --git a/subworkflows/local/id.nf b/subworkflows/local/id.nf
@@ -1,7 +1,6 @@
 //
 // MODULE: Local to the pipeline
 //
-include { DECOYDATABASE } from '../../modules/local/openms/decoydatabase/main'
 include { CONSENSUSID   } from '../../modules/local/openms/consensusid/main'
 
 //