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add to statement of need
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biboyd committed Aug 24, 2020
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7 changes: 7 additions & 0 deletions docs/source/index.rst
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Expand Up @@ -12,6 +12,13 @@ projects utilized to achieve this. Accessing simulation data is done using yt.
Trident is used to generate synthetic sightlines/lightrays and generate synthetic
spectra. Spectacle is used to fit voigt profiles to spectra and extract absorbers.

Observational studies generate large absorber catalogs by studying the absorption
line spectra of distant quasars, as their light passes through intervening galaxies.
Salsa can generate similar catalogs from cosmological and galactic simulations,
allowing research to study these simulations from an observers perspective. This
can give new insights into the data as well as help facilitate comparisons and
collaboration between simulations and observations

In addition a novel method for extracting absorbers, the SPICE method. This uses
cell level data to extract absorbers from a Trident lightray and returns a great
deal of information that can be further analyzed.
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37 changes: 21 additions & 16 deletions paper.md
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Expand Up @@ -69,25 +69,30 @@ Absorption Line Surveyor Application). SALSA is a package that generates
synthetic absorber catalogs by studying the LightRays and/or spectra generated
using Trident. SALSA provides an automated pipeline to process large numbers of
LightRays and extract absorber information into a catalog for further analysis.
Two separate methods are made available to extract absorbers. The “Spectacle
method” uses the Python package Spectacle[^2] to fit Voigt profiles to the
synthetic spectra generated by Trident (see \autoref{fig:1}) [@spectacle]. This
method provides traditional absorption line information (e.g. Doppler broadening,
equivalent width, etc.) and thus creates synthetic absorber catalogs very similar
to those made from observational studies.
One large benefit to studying these synthetic catalogs is the ability to directly
compare to observational catalogs. This can give new insights into the
data as well as help facilitate collaboration between simulators and observers.

# Summary

The “SPICE (Simple Procedure for Iterative Cloud Extraction) method” is a novel
method that uses cell level data from the simulation to find the contiguous
groups of cells which will meaningfully contribute absorption line features to
the synthetic spectra. It does this through an iterative process that isolates
the regions along the LightRay with the highest number density values and
returns those regions with observationally detectable column densities as
individual absorbers (see \autoref{fig:1} or for more details, the documentation[^3]).
This method provides direct access to the information contained in the simulation
(e.g. temperature, velocity, metallicity, etc.) and, in turn, more information
than can be provided by spectral absorption line analysis alone.
Two separate methods are made available to extract absorbers. The “Spectacle
method” uses the Python package Spectacle[^2] to fit Voigt profiles to the
synthetic spectra generated by Trident (see \autoref{fig:1}) [@spectacle]. This
method provides traditional absorption line information (e.g. Doppler
broadening, equivalent width, etc.) and thus creates synthetic absorber
catalogs very similar to those made from observational studies.

The second method, called the “SPICE (Simple Procedure for Iterative Cloud
Extraction) method”, is a novel method that uses cell level data from the
simulation to find the contiguous groups of cells which will meaningfully
contribute absorption line features to the synthetic spectra. It does this
through an iterative process that isolates the regions along the LightRay with
the highest number density values and returns those regions with
observationally detectable column densities as individual absorbers (see
\autoref{fig:1} or for more details, the documentation[^3]). This method
provides direct access to the information contained in the simulation (e.g.
temperature, velocity, metallicity, etc.) and, in turn, more information than
can be provided by spectral absorption line analysis alone.

![These plots were generated using FOGGIE simulation data [@Peeples:2019]. The
top plot shows the number density profile of O VI along the length of the
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