v1.18.0

v1.18.0 (2024-11-28)

Features

• Add slicedim to displayimageslice (#67, c018de5)

• feat: add slice dimension variable for displayImageSlice

Allows user to indicate whether the slice index is first or last

• build: add libraries to run jupyter notebooks

• docs: fix variable type for sliceDim in displayImageSlice docstring

v1.17.0

v1.17.0 (2024-11-22)

Features

• Replace get_logger with imgtools inherited logging instance across modules (01bd13f)

v1.16.0

v1.16.0

v1.14.1

v1.14.1 (2024-11-07)

Bug Fixes

• fix: add readii cli entry point to pyproject (#58) (1710b72)

v1.14.0

v1.14.0 (2024-11-01)

Features

• feat: remove dicom-parser, update mit, deprecate padSeg (#51)

• fix: Update med-imagetools dependency and handle deprecated padSegToMatchCT function in feature_extraction.py with error logging

• chore: Update .gitignore to exclude .old, data, and trash directories for working dir

• Update src/readii/feature_extraction.py

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

• fix: change gitignore data

• better handling of data ignore

---

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com> (a6658e7)

v1.13.2

v1.13.2 (2024-10-22)

Bug Fixes

• fix: Remove hatch config and streamline build settings in pyproject.toml for better package management and deployment (0cf184c)

v1.13.1

v1.13.1 (2024-10-22)

Bug Fixes

• fix: Update CI/CD workflow for PyPI publishing; enhance publish step, remove TestPyPI, and configure pixi.lock sha256 (743ea52)

v1.13.0

v1.13.0 (2024-10-22)

Bug Fixes

• fix: update CI/CD workflow to trigger only on pushes to main branch (2cc686f)

• fix: correct version location in pyproject.toml configuration (bdb49ea)

• fix: improve modality handling in loadSegmentation by reinforcing RTSTRUCT validation and simplifying modality checks (5d1fef6)

• fix: update ruff configuration and linting rules, switch docstring style to numpy, and enhance loader type annotations (0142860)

Chores

• chore: refine CI-CD workflow for Publish-To-PyPi and update pixi.lock SHA for dependency consistency (3c904e1)

• chore: add Ruff linter to CI-CD workflow and update project config for linting and formatting tasks (ecebe9a)

• chore: adjust CI-CD workflow to trigger on any branch for pull requests and comment out previous push configuration (3c77975)

• chore: add Codecov badge to README for improved visibility of test coverage (9472ab6)

• chore: add Codecov step in CI/CD workflow to track coverage and report using coverage.xml (fcbe561)

Continuous Integration

• ci: clean up .github/workflows/ci-cd.yml by removing unnecessary whitespace and ensuring proper formatting at end of file (a6298ab)

• ci: update CI-CD workflow to include Ruff as a dependency for the Unit-Tests job before deployment to PyPI (5d6a7f3)

Documentation

• docs: update README with installation + badges (7bdf5d3)

Features

• feat: enhance segmentation loading by adding validation for unsupported modalities in loadSegmentation function (9ee6931)

• feat: rename job to Publish-To-Test-PyPi and add Test-TestPypi-Installation steps for verifying package deployment (336185f)

• feat: update CI-CD workflow to include publishing to TestPyPI with new environment variables for authentication (d645af1)

• feat: expand pyproject.toml with publish-test command for deploying to test PyPI and add description for build task (f309346)

Unknown

• Merge pull request #42 from bhklab/jjjermiah/refactor/main

feat: Enhance CI/CD Workflow with TestPyPI Publishing, Linting Improvements, and minor docs update (376b414)

• doc: enhance docstrings in loaders.py, providing clearer descriptions and improving module documentation for DICOM and RTSTRUCT functions (249238c)

v1.12.0

v1.12.0 (2024-10-22)

Chores

• chore: update CI/CD workflow to use actions/checkout@v3, fix semantic-release task, and update pixi.lock (790ae04)

• chore: refactor CI/CD workflow with enhanced job structure and add basic config files for coverage and linting (994fd75)

Features

• feat: add semantic-release workflow for automated versioning and update readii version to 1.11.0 with new author email (92bc4d4)

• feat: update to use pixi and pyradiomics-bhklab (6a67be4)

Unknown

• Merge pull request #40 from bhklab/jjjermiah/add-pixi

feat: Use Pixi, pyradiomics fork (fd582a5)

v1.11.0

v1.11.0 (2024-09-25)

Feature

• feat(feature_extraction): add logging for error raised when cropping CT and segmentation (d9d8069)

Fix

• fix(feature_extraction): actually raise an exception for negative control creation (e1a9888)

Unknown

• Merge pull request #39 from bhklab/negative_control_error_handling

Negative control error handling (2bac7db)

• Merge branch 'main' of github.com:bhklab/yarea into main (556178e)