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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 67 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 41 9

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

  5. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 4

  6. orcestra-downloader orcestra-downloader Public

    Python

Repositories

Showing 10 of 186 repositories
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 41 MIT 9 19 5 Updated Jan 18, 2025
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Jupyter Notebook 4 MIT 0 26 (1 issue needs help) 3 Updated Jan 17, 2025
  • readii-fmcib Public

    Taming the unicorn that is FMCIB

    bhklab/readii-fmcib’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Jan 16, 2025
  • med-image_test-data Public
    bhklab/med-image_test-data’s past year of commit activity
    Python 1 0 0 0 Updated Jan 16, 2025
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    3 0 25 (2 issues need help) 3 Updated Jan 14, 2025
  • med-imagenet Public

    Med-ImageNet processing scripts via Med-ImageTools AutoPipeline

    bhklab/med-imagenet’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Jan 13, 2025
  • ispy-readii Public

    Running READII on the I-SPY cohort for radiogenomic analysis.

    bhklab/ispy-readii’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 8, 2025
  • PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    bhklab/PharmacoGx’s past year of commit activity
    R 67 GPL-3.0 26 70 0 Updated Jan 7, 2025
  • PredictioR Public
    bhklab/PredictioR’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 3, 2025
  • SignatureSets Public

    Compendium of published molecular signatures

    bhklab/SignatureSets’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 3, 2025
View all repositories

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