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Update docs
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bencardoen committed Nov 4, 2024
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Expand Up @@ -55,6 +55,10 @@ python3 scripts/csvcuration.py --inputdirectory <where you saved the output> --o
```
By default this will look for output produced with ``\alpha`` 0.05, you can override this as needed with `--alpha 0.01` for example.

Parameters
- --lnsize: vesicle filter size for mitochondria, default set to 9, override to zero if you want no filtering
- --mitoint: vesicle filter intensity for mitochondria, default set 0.2, override to zero if you want no filtering

This will produce:

```
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