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{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-25T10:13:26","documenter_version":"1.8.0"}}
{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-25T10:20:32","documenter_version":"1.8.0"}}
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<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Cluster Usage · SubPrecisionContactDetection Documentation</title><meta name="title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta property="og:title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta property="twitter:title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta name="description" content="Documentation for SubPrecisionContactDetection Documentation."/><meta property="og:description" content="Documentation for SubPrecisionContactDetection Documentation."/><meta property="twitter:description" content="Documentation for SubPrecisionContactDetection Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link 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data-theme-name="catppuccin-mocha"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-macchiato.css" data-theme-name="catppuccin-macchiato"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-frappe.css" data-theme-name="catppuccin-frappe"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-latte.css" data-theme-name="catppuccin-latte"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../"><img src="../assets/logo.png" alt="SubPrecisionContactDetection Documentation logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../">SubPrecisionContactDetection Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><a class="tocitem" href="../tutorial/">Tutorial</a></li><li><a class="tocitem" href="../parameters/">Parameter selection and tuning</a></li><li><a class="tocitem" href="../output/">Generated output</a></li><li class="is-active"><a class="tocitem" href>Cluster Usage</a></li><li><a class="tocitem" href="../installation/">Installation</a></li><li><a class="tocitem" href="../validation/">Validation and Limitations</a></li><li><a class="tocitem" href="../postprocessing/">Postprocessing</a></li><li><a class="tocitem" href="../faq/">Help and FAQ</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Cluster Usage</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Cluster Usage</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/bencardoen/SubPrecisionContactDetection.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/bencardoen/SubPrecisionContactDetection.jl/blob/main/docs/src/clustercomputing.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Cluster-Computing"><a class="docs-heading-anchor" href="#Cluster-Computing">Cluster Computing</a><a id="Cluster-Computing-1"></a><a class="docs-heading-anchor-permalink" href="#Cluster-Computing" title="Permalink"></a></h1><p>This page documents the usage of the contact detection on [SLURM] based clusters.</p><p>Examples using the cluster at the <a href="https://www.alliancecan.ca/en">Digital Alliance</a> are provided <a href="https://github.com/NanoscopyAI/tutorial_mcs_detect">here</a></p><p>Cluster specific scripts can also be found <a href="https://github.com/bencardoen/SubPrecisionContactDetection.jl/tree/main/hpcscripts">here</a></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../output/">« Generated output</a><a class="docs-footer-nextpage" href="../installation/">Installation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option 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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Cluster Usage · SubPrecisionContactDetection Documentation</title><meta name="title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta property="og:title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta property="twitter:title" content="Cluster Usage · SubPrecisionContactDetection Documentation"/><meta name="description" content="Documentation for SubPrecisionContactDetection Documentation."/><meta property="og:description" content="Documentation for SubPrecisionContactDetection Documentation."/><meta property="twitter:description" content="Documentation for SubPrecisionContactDetection Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link 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alt="SubPrecisionContactDetection Documentation logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../">SubPrecisionContactDetection Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><a class="tocitem" href="../tutorial/">Tutorial</a></li><li><a class="tocitem" href="../parameters/">Parameter selection and tuning</a></li><li><a class="tocitem" href="../output/">Generated output</a></li><li class="is-active"><a class="tocitem" href>Cluster Usage</a></li><li><a class="tocitem" href="../installation/">Installation</a></li><li><a class="tocitem" href="../validation/">Validation and Limitations</a></li><li><a class="tocitem" href="../postprocessing/">Postprocessing</a></li><li><a class="tocitem" href="../faq/">Help and FAQ</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Cluster Usage</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Cluster Usage</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/bencardoen/SubPrecisionContactDetection.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/bencardoen/SubPrecisionContactDetection.jl/blob/main/docs/src/clustercomputing.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Cluster-Computing"><a class="docs-heading-anchor" href="#Cluster-Computing">Cluster Computing</a><a id="Cluster-Computing-1"></a><a class="docs-heading-anchor-permalink" href="#Cluster-Computing" title="Permalink"></a></h1><p>This page documents the usage of the contact detection on [SLURM] based clusters.</p><p>Examples using the cluster at the <a href="https://www.alliancecan.ca/en">Digital Alliance</a> are provided <a href="https://github.com/NanoscopyAI/tutorial_mcs_detect">here</a></p><p>Cluster specific scripts can also be found <a href="https://github.com/bencardoen/SubPrecisionContactDetection.jl/tree/main/hpcscripts">here</a></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../output/">« Generated output</a><a class="docs-footer-nextpage" href="../installation/">Installation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option 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