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@benvvalk benvvalk released this 11 Sep 21:04
· 370 commits to master since this release

This release provides bug fixes and modest improvements to
Bloom filter assembly contiguity/correctness. Parallelization
of Sealer has also been improved, thanks to contributions by
@vlad0x00.

abyss-bloom-dbg:

  • upgrade to most recent version of ntHash to reduce
    some assembly/hashing artifacts. On a human assembly, this
    reduced QUAST major misassemblies by 5% and increased
    scaffold contiguity by 10%
  • kc parameter now also applies to MPI assemblies (see below)

abyss-fac:

  • change N20 and N80 to N25 and N75, respectively

ABYSS-P:

  • add --kc option, with implements a hard minimum k-mer
    multiplicity cutoff

abyss-pe:

  • fix zsh: no such option: pipefail error with
    old versions of zsh (fallback to bash instead)
  • adding time=1 now times all assembly commands

abyss-sealer:

  • parallelize gap sealing with OpenMP (thanks to
    @vlad0x00!)
  • add --gap-file option (thanks to @vlad0x00!)

DistanceEst:

  • add support for GFA output