2.1.1
This release provides bug fixes and modest improvements to
Bloom filter assembly contiguity/correctness. Parallelization
of Sealer has also been improved, thanks to contributions by
@vlad0x00.
abyss-bloom-dbg:
- upgrade to most recent version of ntHash to reduce
some assembly/hashing artifacts. On a human assembly, this
reduced QUAST major misassemblies by 5% and increased
scaffold contiguity by 10% kc
parameter now also applies to MPI assemblies (see below)
abyss-fac:
- change N20 and N80 to N25 and N75, respectively
ABYSS-P:
- add
--kc
option, with implements a hard minimum k-mer
multiplicity cutoff
abyss-pe:
- fix
zsh: no such option: pipefail
error with
old versions ofzsh
(fallback tobash
instead) - adding
time=1
now times all assembly commands
abyss-sealer:
- parallelize gap sealing with OpenMP (thanks to
@vlad0x00!) - add
--gap-file
option (thanks to @vlad0x00!)
DistanceEst:
- add support for GFA output