v.0.7.1-beta

Full Changelog: v.0.7-beta...v.0.7.1-beta

Update fastqc and multiqc nf-core modules. The new multiqc reports visualize data with plotly and are faster.

v.0.7

• Implement fasttree, remove iqtree
• Fix bugs in phyloseq modules
• New module to remove singletons with VSEARCH
• Containers defined in modules.config instead of in modules, to have all containers in one place (easier to update)
• Update nf-core modules: multiqc, fastqc, dumpsoftwareversions
• Update VSEARCH, DADA2
• Increase memory, time and cpu requirements for use with larger datasets (to prevent crashing with set of 6000 samples)
• Add new profile 'beast' to use pipeline on server in Amsterdam UMC
• Update documentation

Full Changelog: v.0.5-beta...v.0.7-beta

First release for Zenodo

v.0.6-beta

check for presence primers before trimming

First release

This is the first release of this pipeline. It is still subject to further testing in different set-ups.