Update documentation

_sources/markdown-notebooks.md

@@ -51,3 +51,7 @@ If you have a markdown file and you'd like to quickly add YAML metadata to it, s
 ```
 jupyter-book myst init path/to/markdownfile.md
 ```
+
+
+```{tableofcontents}
+```

genindex.html

@@ -183,7 +183,7 @@
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
-<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.4. Here’s my sample title</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
 </ul>
 </details></li>
 </ul>

index.html

@@ -187,7 +187,7 @@
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
-<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.4. Here’s my sample title</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
 </ul>
 </details></li>
 </ul>
@@ -407,7 +407,10 @@ <h1>Welcome to your Jupyter Book<a class="headerlink" href="#welcome-to-your-jup
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
-<li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a></li>
+<li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
+</ul>
+</li>
 </ul>
 </div>
 </section>

markdown-notebooks.html

@@ -60,7 +60,7 @@
     <script>DOCUMENTATION_OPTIONS.pagename = 'markdown-notebooks';</script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="3.4. Here’s my sample title" href="mymarkdownfile.html" />
+    <link rel="next" title="3.3.1. Here’s my sample title" href="mymarkdownfile.html" />
     <link rel="prev" title="2. Content with notebooks" href="notebooks.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -184,7 +184,7 @@
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
 <li class="toctree-l1 current active has-children"><a class="current reference internal" href="#">3. Notebooks with MyST Markdown</a><details open="open"><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
-<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.4. Here’s my sample title</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
 </ul>
 </details></li>
 </ul>
@@ -440,9 +440,12 @@ <h2><span class="section-number">3.3. </span>Quickly add YAML metadata for MyST
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">jupyter</span><span class="o">-</span><span class="n">book</span> <span class="n">myst</span> <span class="n">init</span> <span class="n">path</span><span class="o">/</span><span class="n">to</span><span class="o">/</span><span class="n">markdownfile</span><span class="o">.</span><span class="n">md</span>
 </pre></div>
 </div>
-</section>
 <div class="toctree-wrapper compound">
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
+</ul>
 </div>
+</section>
 </section>
 
     <script type="text/x-thebe-config">
@@ -489,7 +492,7 @@ <h2><span class="section-number">3.3. </span>Quickly add YAML metadata for MyST
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title"><span class="section-number">3.4. </span>Here’s my sample title</p>
+        <p class="prev-next-title"><span class="section-number">3.3.1. </span>Here’s my sample title</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>

mymarkdownfile.html

@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>3.4. Here’s my sample title &#8212; DIG4BIO-workshops</title>
+    <title>3.3.1. Here’s my sample title &#8212; DIG4BIO-workshops</title>
 
 
 
@@ -183,7 +183,7 @@
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
 <li class="toctree-l1 current active has-children"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a><details open="open"><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul class="current">
-<li class="toctree-l2 current active"><a class="current reference internal" href="#">3.4. Here’s my sample title</a></li>
+<li class="toctree-l2 current active"><a class="current reference internal" href="#">3.3.1. Here’s my sample title</a></li>
 </ul>
 </details></li>
 </ul>
@@ -381,7 +381,7 @@ <h2> Contents </h2>
             </div>
             <nav aria-label="Page">
                 <ul class="visible nav section-nav flex-column">
-<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#here-s-my-first-section">3.4.1. Here’s my first section</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#here-s-my-first-section">3.3.1.1. Here’s my first section</a></li>
 </ul>
             </nav>
         </div>
@@ -394,10 +394,10 @@ <h2> Contents </h2>
                 <article class="bd-article">
 
   <section class="tex2jax_ignore mathjax_ignore" id="here-s-my-sample-title">
-<h1><span class="section-number">3.4. </span>Here’s my sample title<a class="headerlink" href="#here-s-my-sample-title" title="Link to this heading">#</a></h1>
+<h1><span class="section-number">3.3.1. </span>Here’s my sample title<a class="headerlink" href="#here-s-my-sample-title" title="Link to this heading">#</a></h1>
 <p>This is some sample text.</p>
 <section id="here-s-my-first-section">
-<span id="my-label"></span><h2><span class="section-number">3.4.1. </span>Here’s my first section<a class="headerlink" href="#here-s-my-first-section" title="Link to this heading">#</a></h2>
+<span id="my-label"></span><h2><span class="section-number">3.3.1.1. </span>Here’s my first section<a class="headerlink" href="#here-s-my-first-section" title="Link to this heading">#</a></h2>
 <p>Here is a <a class="reference internal" href="intro.html"><span class="std std-doc">reference to the intro</span></a>. Here is a reference to <a class="reference internal" href="#my-label"><span class="std std-ref">here’s my label</span></a>.</p>
 <p>Here is my nifty citation <span id="id1">[<a class="reference internal" href="markdown.html#id8" title="Fernando Perez, Brian E Granger, and John D Hunter. Python: an ecosystem for scientific computing. Computing in Science \\&amp; Engineering, 13(2):13–21, 2011.">Perez <em>et al.</em>, 2011</a>]</span>.</p>
 <p>Here are multiple citations <span id="id2">[<a class="reference internal" href="markdown.html#id4" title="Christopher Ramsay Holdgraf, Wendy de Heer, Brian N. Pasley, Jochem W. Rieger, Nathan Crone, Jack J. Lin, Robert T. Knight, and Frédéric E. Theunissen. Rapid tuning shifts in human auditory cortex enhance speech intelligibility. Nature Communications, 7(May):13654, 2016. URL: http://www.nature.com/doifinder/10.1038/ncomms13654, doi:10.1038/ncomms13654.">Holdgraf <em>et al.</em>, 2016</a>, <a class="reference internal" href="markdown.html#id8" title="Fernando Perez, Brian E Granger, and John D Hunter. Python: an ecosystem for scientific computing. Computing in Science \\&amp; Engineering, 13(2):13–21, 2011.">Perez <em>et al.</em>, 2011</a>]</span>!</p>
@@ -476,7 +476,7 @@ <h1><span class="section-number">3.4. </span>Here’s my sample title<a class="h
   </div>
   <nav class="bd-toc-nav page-toc">
     <ul class="visible nav section-nav flex-column">
-<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#here-s-my-first-section">3.4.1. Here’s my first section</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#here-s-my-first-section">3.3.1.1. Here’s my first section</a></li>
 </ul>
   </nav></div>
 

search.html

@@ -185,7 +185,7 @@
 <li class="toctree-l1"><a class="reference internal" href="markdown.html">1. Alternative name</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">2. Content with notebooks</a></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="markdown-notebooks.html">3. Notebooks with MyST Markdown</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
-<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.4. Here’s my sample title</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mymarkdownfile.html">3.3.1. Here’s my sample title</a></li>
 </ul>
 </details></li>
 </ul>