6.4.1

myco_raw can now have date-pipelane-ran saved from previous call cached runs.

6.4.0

What's Changed

• Output ludicrous amounts of QC metrics, soften QC limits, use integers for percentages instead of floats, update decontam by @aofarrel in #53

Full Changelog: 6.3.0...6.4.0

6.3.0

Mostly a myco_raw focused release.

What's Changed

• New theiagen tbprofiler, updated clockwork, by @aofarrel in #52

Full Changelog: 6.2.5...6.3.0

6.2.5

Adds an optional low resource mode to the clockwork tasks, which allows greater concurrency on low-end non-cloud computes. Be aware that enabling this on GCP may counterintuitively result in higher costs!

6.2.4

• Fix the custom decontamination report's header not being tab-separated
• Add the counts.out TSV as a workflow-level option in myco_raw (previous release added it to myco_sra)

Full Changelog: 6.2.3...6.2.4

6.2.3

• Add citations to the top-level readme
• myco_sra now has a report task designed not to break previous call caches

Full Changelog: 6.2.2...6.2.3

6.2.2

myco_sra now detects super tiny samples in the pull task and decimated samples in the decontam task and saves you time/money/reruns by throwing out those samples quickly.

What's Changed

• Detect decimated samples by @aofarrel in #50

Full Changelog: 6.2.1...6.2.2

6.2.1

What's Changed

• Stricter guardrail by @aofarrel in #49

Full Changelog: 6.2.0...6.2.1

6.2.0

This is the version that you're probably looking for.

What's Changed

• Overhaul of myco_sra by @aofarrel in #48
• Update prereqs of myco_raw by @aofarrel in #47

Full Changelog: 6.0.1...6.2.0

6.1.0 - New VCF->Diff script for VCF filtering

Full Changelog: 6.0.1...6.1.0