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WIP: Guard against indices with 0 samples #1037

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Run time

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Job	Run time
Test (GPU)	1m 36s
Lint	37s
Test checkpoint (GPU)	2m 29s
Test	2m 18s
Test MoE (GPU)	1m 3s
Test checkpoint	1m 29s
Type check	57s
Build	44s
Style	1m 21s
Docs	1m 5s
Lint (min Python)	39s
Release	0s
	14m 18s