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add required linux package for satellite job #3664

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merged 1 commit into from
Oct 16, 2024
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Mnoble-19
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@Mnoble-19 Mnoble-19 commented Oct 16, 2024

Description

[Adds a missing package that caused microservice to fail]

Changes Made

  • add libgomp1 package to docker build script

Testing

  • Tested locally
  • Tested against staging environment
  • Relevant tests passed: [List test names]

Affected Services

  • Which services were modified:
    • Spatial

API Documentation Updated?

  • Yes, API documentation was updated
  • No, API documentation does not need updating

Additional Notes

[Add any additional notes or comments here]

Summary by CodeRabbit

  • New Features

    • Enhanced error reporting during satellite predictions with direct console output.
  • Bug Fixes

    • Corrected model file path in the prediction method for improved functionality.
  • Chores

    • Updated Dockerfile to include the libgomp1 library for better environment setup.

@Mnoble-19 Mnoble-19 requested a review from Baalmart October 16, 2024 06:15
@Mnoble-19 Mnoble-19 self-assigned this Oct 16, 2024
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coderabbitai bot commented Oct 16, 2024

📝 Walkthrough

Walkthrough

The pull request introduces two main changes: an update to the Dockerfile to install the libgomp1 library during the base stage, and modifications to the make_predictions method in the SatellitePredictionView class. The Dockerfile now includes a command to update the package list and install libgomp1, while the Python file corrects a string format and alters the error logging mechanism from using app.logger.error to a direct print statement.

Changes

File Path Change Summary
src/spatial/Dockerfile Added installation step for libgomp1 in the base stage.
src/spatial/views/satellite_predictions.py Modified make_predictions method: corrected model file path string and changed error handling to print statement.

Possibly related PRs

Suggested labels

ready for review

Suggested reviewers

  • Baalmart

🌟 In the Dockerfile, a new gem,
libgomp1 joins the program!
Predictions made with a clearer sight,
Errors now print, shining bright.
Code evolves, a joyful dance,
In this change, we take a chance! 🎉


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codecov bot commented Oct 16, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 27.04%. Comparing base (c89dbbb) to head (3b097e3).
Report is 2 commits behind head on staging.

Additional details and impacted files

Impacted file tree graph

@@           Coverage Diff            @@
##           staging    #3664   +/-   ##
========================================
  Coverage    27.04%   27.04%           
========================================
  Files          146      146           
  Lines        21340    21340           
  Branches       274      274           
========================================
  Hits          5772     5772           
  Misses       15568    15568           

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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between c89dbbb and 3b097e3.

📒 Files selected for processing (2)
  • src/spatial/Dockerfile (1 hunks)
  • src/spatial/views/satellite_predictions.py (2 hunks)
🧰 Additional context used
🔇 Additional comments (3)
src/spatial/Dockerfile (1)

4-6: Excellent addition of the libgomp1 package!

The changes made to install the libgomp1 package are well-implemented and align perfectly with the PR objectives. Here's why this addition is commendable:

  1. It directly addresses the issue of the missing package that was causing the microservice to fail.
  2. The installation command follows Dockerfile best practices:
    • Combines update, install, and cleanup in a single RUN instruction, reducing the number of layers.
    • Uses the --no-install-recommends flag to minimize unnecessary package installation, keeping the image size in check.
    • Cleans up /var/lib/apt/lists/* to further reduce the image size.
  3. The placement in the base stage ensures the package is available across all environments (development, staging, and production).

This change should resolve the dependency issue for the satellite job functionality without introducing unnecessary bloat to the Docker image. Well done!

src/spatial/views/satellite_predictions.py (2)

37-37: Excellent simplification of the model file path string.

The removal of the 'f' prefix from the string is a positive change. Since there are no variables being interpolated, using a regular string instead of an f-string improves code clarity and slightly optimizes performance. Well done on this subtle yet meaningful improvement!


Line range hint 1-51: Overall assessment and alignment with PR objectives

Thank you for your work on this file. While the string simplification is a positive change, I have some concerns:

  1. The change in error logging mechanism might negatively impact our ability to track and analyze errors effectively.
  2. There seems to be a discrepancy between the PR objectives and the changes in this file. The PR summary mentions adding the libgomp1 package to the Docker build script, but this Python file doesn't reflect that change.

Could you please:

  1. Reconsider the error logging change as per my previous comment?
  2. Clarify if there are other files in this PR that address the addition of the libgomp1 package?
  3. If not, consider updating the PR description to accurately reflect the changes made in this file?

To help verify the changes related to the libgomp1 package, let's run the following script:

This script will help us understand if and where the libgomp1 package is being added, as mentioned in the PR objectives.

✅ Verification successful

Verification of libgomp1 Addition in Dockerfiles

Great work on updating the Docker configurations. The libgomp1 package has been successfully added to the following Dockerfiles:

  • src/workflows/Dockerfile
  • src/predict/jobs/forecast/Dockerfile
  • src/spatial/Dockerfile
  • src/predict/jobs/forecast_training/Dockerfile
  • src/analytics/jobs/reports/Dockerfile

This aligns well with the PR objective of incorporating the libgomp1 package where necessary. The initial discrepancy regarding its absence in the root Dockerfile appears to be intentional and appropriate based on the project's structure.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for Dockerfile changes related to libgomp1

# Test 1: Check if Dockerfile exists and contains libgomp1
if [ -f Dockerfile ]; then
  echo "Dockerfile found. Checking for libgomp1..."
  grep -n "libgomp1" Dockerfile
else
  echo "Dockerfile not found in the root directory."
fi

# Test 2: Search for any mentions of libgomp1 in the entire codebase
echo "Searching for libgomp1 in the entire codebase..."
rg "libgomp1"

Length of output: 526

src/spatial/views/satellite_predictions.py Show resolved Hide resolved
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Spatial changes in this PR available for preview here

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@Baalmart Baalmart left a comment

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Thanks @Mnoble-19

@Baalmart Baalmart merged commit e331608 into staging Oct 16, 2024
50 checks passed
@Baalmart Baalmart deleted the satellite-fix branch October 16, 2024 06:21
@Baalmart Baalmart mentioned this pull request Oct 16, 2024
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2 participants