This repository contains material for the analysis of Microtus whole genomes.
Files for data preprocessing:
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00_compute_popgen_stats.R
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00_compute_RNDsp.R
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00_utils.R
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00_VCF_preprocessing.sh
Files for data analysis and visualisation:
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01_make_pop_history_plots.R
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02_make_RNDsp_plots.R
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03_make_GO_Enrichment_plots.R
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04_make_outlier_overlap_plot.R
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05_make_zooms_div_plot.R
Supplementary information:
99_supp_correlations-dxy-pi.R