Bump the pip group across 1 directory with 13 updates

Updates the requirements on [pydantic](https://github.com/pydantic/pydantic), [protobuf](https://github.com/protocolbuffers/protobuf), [chromadb](https://github.com/chroma-core/chroma), [graphrag-sdk](https://github.com/FalkorDB/GraphRAG-SDK), [llama-index](https://github.com/run-llama/llama_index), llama-index-graph-stores-neo4j, [llama-index-core](https://github.com/run-llama/llama_index), llama-index-readers-web, [litellm](https://github.com/BerriAI/litellm), [pydantic-ai](https://github.com/pydantic/pydantic-ai), [mypy](https://github.com/python/mypy), [ruff](https://github.com/astral-sh/ruff) and [uv](https://github.com/astral-sh/uv) to permit the latest version.

Updates `pydantic` from 1.10.9 to 2.10.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v1.10.9...v2.10.5)

Updates `protobuf` from 4.25.3 to 5.29.3
- [Release notes](https://github.com/protocolbuffers/protobuf/releases)
- [Changelog](https://github.com/protocolbuffers/protobuf/blob/main/protobuf_release.bzl)
- [Commits](protocolbuffers/protobuf@v4.25.3...v5.29.3)

Updates `chromadb` from 0.5.3 to 0.6.3
- [Release notes](https://github.com/chroma-core/chroma/releases)
- [Changelog](https://github.com/chroma-core/chroma/blob/main/RELEASE_PROCESS.md)
- [Commits](chroma-core/chroma@0.5.3...0.6.3)

Updates `graphrag-sdk` from 0.3.3 to 0.4.1
- [Release notes](https://github.com/FalkorDB/GraphRAG-SDK/releases)
- [Commits](FalkorDB/GraphRAG-SDK@v0.3.3...v0.4.1)

Updates `llama-index` from 0.12.5 to 0.12.11
- [Release notes](https://github.com/run-llama/llama_index/releases)
- [Changelog](https://github.com/run-llama/llama_index/blob/main/CHANGELOG.md)
- [Commits](run-llama/llama_index@v0.12.5...v0.12.11)

Updates `llama-index-graph-stores-neo4j` from 0.4.2 to 0.4.5

Updates `llama-index-core` from 0.12.5 to 0.12.11
- [Release notes](https://github.com/run-llama/llama_index/releases)
- [Changelog](https://github.com/run-llama/llama_index/blob/main/CHANGELOG.md)
- [Commits](run-llama/llama_index@v0.12.5...v0.12.11)

Updates `llama-index-readers-web` from 0.3.3 to 0.3.4

Updates `litellm` to 1.59.0
- [Release notes](https://github.com/BerriAI/litellm/releases)
- [Commits](BerriAI/litellm@v0.1.387...v1.59.0)

Updates `pydantic-ai` from 0.0.13 to 0.0.19
- [Release notes](https://github.com/pydantic/pydantic-ai/releases)
- [Changelog](https://github.com/pydantic/pydantic-ai/blob/main/docs/message-history.md)
- [Commits](pydantic/pydantic-ai@v0.0.13...v0.0.19)

Updates `mypy` from 1.9.0 to 1.14.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@1.9.0...v1.14.1)

Updates `ruff` from 0.9.1 to 0.9.2
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.9.1...0.9.2)

Updates `uv` from 0.5.16 to 0.5.21
- [Release notes](https://github.com/astral-sh/uv/releases)
- [Changelog](https://github.com/astral-sh/uv/blob/main/CHANGELOG.md)
- [Commits](astral-sh/uv@0.5.16...0.5.21)

---
updated-dependencies:
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pip
- dependency-name: protobuf
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pip
- dependency-name: chromadb
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip
- dependency-name: graphrag-sdk
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip
- dependency-name: llama-index
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: llama-index-graph-stores-neo4j
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: llama-index-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: llama-index-readers-web
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: litellm
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: pydantic-ai
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip
- dependency-name: ruff
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: uv
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
...

Signed-off-by: dependabot[bot] <[email protected]>

pyproject.toml

@@ -82,8 +82,8 @@ jupyter-executor = [
 ]
 
 retrievechat = [
-    "protobuf==4.25.3",
-    "chromadb==0.5.3",
+    "protobuf==5.29.3",
+    "chromadb==0.6.3",
     "sentence_transformers",
     "pypdf",
     "ipython",
@@ -110,16 +110,16 @@ retrievechat-qdrant = [
 ]
 
 graph-rag-falkor-db = [
-    "graphrag_sdk==0.3.3",
+    "graphrag_sdk==0.4.1",
     "falkordb>=1.0.10"
 ]
 
 neo4j = [
     "docx2txt==0.8",
-    "llama-index==0.12.5",
-    "llama-index-graph-stores-neo4j==0.4.2",
-    "llama-index-core==0.12.5",
-    "llama-index-readers-web==0.3.3",
+    "llama-index==0.12.11",
+    "llama-index-graph-stores-neo4j==0.4.5",
+    "llama-index-core==0.12.11",
+    "llama-index-readers-web==0.3.4",
 ]
 
 # used for agentchat_realtime_swarm notebook and realtime agent twilio demo
@@ -133,10 +133,10 @@ interop-crewai = [
     "crewai[tools]>=0.86,<1; python_version>='3.10' and python_version<'3.13'",
     "weaviate-client==4.10.2; python_version>='3.10' and python_version<'3.13'",
     # crewai uses litellm, litellm introduced uvloop as deps with version 1.57.5 which does not support win32
-    "litellm<1.57.5; sys_platform=='win32'",
+    "litellm<1.59.1; sys_platform=='win32'",
 ]
 interop-langchain = ["langchain-community>=0.3.12,<1"]
-interop-pydantic-ai = ["pydantic-ai==0.0.13"]
+interop-pydantic-ai = ["pydantic-ai==0.0.19"]
 interop =[
     "pyautogen[interop-crewai, interop-langchain, interop-pydantic-ai]",
 ]
@@ -145,7 +145,7 @@ interop =[
 autobuild = ["chromadb", "sentence-transformers", "huggingface-hub", "pysqlite3-binary"]
 
 blendsearch = ["flaml[blendsearch]"]
-mathchat = ["sympy", "pydantic==1.10.9", "wolframalpha"]
+mathchat = ["sympy", "pydantic==2.10.5", "wolframalpha"]
 captainagent = ["pyautogen[autobuild]", "pandas"]
 teachable = ["chromadb"]
 lmm = ["replicate", "pillow"]
@@ -195,12 +195,12 @@ docs = [
 ]
 
 types = [
-    "mypy==1.9.0",
+    "mypy==1.14.1",
     "pyautogen[test, jupyter-executor, interop]",
 ]
 
 lint = [
-    "ruff==0.9.1",
+    "ruff==0.9.2",
     "codespell==2.3.0",
     "pyupgrade-directories==0.3.0",
 ]
@@ -209,7 +209,7 @@ dev = [
     "pyautogen[lint,test,types,docs]",
     "pre-commit==4.0.1",
     "detect-secrets==1.5.0",
-    "uv==0.5.16",
+    "uv==0.5.21",
 ]