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Fix errors in short command line options
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@a-slide
a-slide committed Jan 13, 2020
1 parent f4bbc3f commit 1ce02aa
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions pycoMeth/__main__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -61,8 +61,8 @@ def main(args=None):
sp_met_io = sp_met.add_argument_group("Input/Output options")
arg_from_docstr(sp_met_io, f, "aggregate_fn_list", "i")
arg_from_docstr(sp_met_io, f, "ref_fasta_fn", "f")
arg_from_docstr(sp_met_io, f, "output_tsv_fn", "b")
arg_from_docstr(sp_met_io, f, "output_bed_fn", "t")
arg_from_docstr(sp_met_io, f, "output_bed_fn", "b")
arg_from_docstr(sp_met_io, f, "output_tsv_fn", "t")
sp_met_ms = sp_met.add_argument_group("Misc options")
arg_from_docstr(sp_met_ms, f, "max_missing", "m")
arg_from_docstr(sp_met_ms, f, "min_diff_llr", "l")
Expand All @@ -76,8 +76,8 @@ def main(args=None):
sp_cgi.set_defaults(func=f)
sp_cgi_io = sp_cgi.add_argument_group("Input/Output options")
arg_from_docstr(sp_cgi_io, f, "ref_fasta_fn", "f")
arg_from_docstr(sp_cgi_io, f, "output_tsv_fn", "b")
arg_from_docstr(sp_cgi_io, f, "output_bed_fn", "t")
arg_from_docstr(sp_cgi_io, f, "output_bed_fn", "b")
arg_from_docstr(sp_cgi_io, f, "output_tsv_fn", "t")
sp_cgi_ms = sp_cgi.add_argument_group("Misc options")
arg_from_docstr(sp_cgi_ms, f, "merge_gap", "m")
arg_from_docstr(sp_cgi_ms, f, "min_win_len", "w")
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