git clone https://github.com/ZhangZhenmiao/stLFR_Pipe.git && cd stLFR_Pipe && make && chmod +x *.sh *.py
You need add the install folder to the $PATH variable.
run_pipe.sh <path_to_stlfr_read1> <path_to_stlfr_read2> <number_of_threads> <path_to_"stLFR_Pipe"_folder> <output_folder> <barcode_type, i.e., 30/42/54>
test_run/test.sh is an example.