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umahsn authored Jan 30, 2025
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Expand Up @@ -25,21 +25,29 @@ _**v2.0.0** (Feb 2 2022)_ : A major update in API and installation instructions,
_**v1.0.0** (Aug 8 2021)_ : First post-production release with citeable DOI: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5176764.svg)](https://doi.org/10.5281/zenodo.5176764)

## Installation
NanoCaller can be installed using Docker or Conda. The easiest way to install is from the bioconda channel:
NanoCaller can be installed using Docker or Conda. The easiest way to install is from the bioconda channel.

For installation in a new conda environmment (recommended), use:
```
conda create -n nanocaller_env -c bioconda nanocaller
conda activate nanocaller_env
NanoCaller --help
```

For installation in existing conda environment, use"
`conda install -c bioconda nanocaller`

or using Docker:
For Docker, use:

```
VERSION="3.4.1"
VERSION="3.6.0"
docker pull genomicslab/nanocaller:${VERSION}
```

or using Singularity:
and for Singularity, use:

```
VERSION="3.4.1"
VERSION="3.6.0"
singularity pull docker://genomicslab/nanocaller:${VERSION}
```

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