BUGFIX: Add library CSV to GEX outputs no matter what

TheJacksonLaboratory · Oct 12, 2021 · 0d39ecb · 0d39ecb
1 parent 06fda99
commit 0d39ecb
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/cellranger_gex.nf b/modules/cellranger_gex.nf
@@ -71,6 +71,7 @@ process run_cellranger_count {
 
     # do rearrange here
     mkdir -p ${record.tool_pubdir}/_files
+    mv \$lib_csv_file ${record.tool_pubdir}/
     mv ${record.output_id}/_* ${record.tool_pubdir}/_files
     mv ${record.output_id}/*.tgz ${record.tool_pubdir}/
     find ${record.output_id}/SC_RNA_COUNTER_CS/ -type f -name "*_summary_json.json" -exec mv {} ${record.tool_pubdir}/summary.json \\;