[Issue 1883,1879,1878,1877,1876,1766,1682] 1878 continued - System data loader refactor, cleanup, and additional patches

.gitignore

@@ -108,3 +108,7 @@ dist/
 !**/src/test/**
 
 *.mv.db
+
+### Environment Specific ###
+application-*.yml
+logback-*.yml

.wvr/build-config.js

@@ -99,7 +99,7 @@ const config = {
       './node_modules/@wvr/core/app/services/alertService.js',
       './node_modules/@wvr/core/app/services/validationStore.js',
       './node_modules/@wvr/core/app/services/userService.js',
-      './node_modules/@wvr/core/app/services/modalService.js',
+      // './node_modules/@wvr/core/app/services/modalService.js',
       './node_modules/@wvr/core/app/services/modelCache.js',
       './node_modules/@wvr/core/app/services/modelUpdateService.js',
       './node_modules/@wvr/core/app/repo/abstractRepo.js',

pom.xml

@@ -20,12 +20,13 @@
   <parent>
     <groupId>edu.tamu.weaver</groupId>
     <artifactId>webservice-parent</artifactId>
-    <version>2.1.1-RC19</version>
+    <version>2.1.1</version>
     <relativePath/>
   </parent>
 
   <properties>
     <java.version>11</java.version>
+    <maven.compiler.release>${java.version}</maven.compiler.release>
     <maven.compiler.source>${java.version}</maven.compiler.source>
     <maven.compiler.target>${java.version}</maven.compiler.target>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
@@ -222,6 +223,12 @@
       <scope>test</scope>
     </dependency>
 
+    <dependency>
+      <groupId>org.springframework.security</groupId>
+      <artifactId>spring-security-test</artifactId>
+      <scope>test</scope>
+    </dependency>
+
     <dependency>
       <groupId>org.mockito</groupId>
       <artifactId>mockito-core</artifactId>

src/main/java/org/tdl/vireo/ApplicationInitialization.java

@@ -1,19 +1,22 @@
 package org.tdl.vireo;
 
+import org.springframework.beans.factory.InitializingBean;
 import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.core.Ordered;
-import org.springframework.boot.CommandLineRunner;
 import org.springframework.context.annotation.Lazy;
-import org.springframework.context.annotation.Profile;
+import org.springframework.core.Ordered;
 import org.springframework.core.annotation.Order;
+import org.springframework.core.env.Environment;
+import org.springframework.core.env.Profiles;
 import org.springframework.stereotype.Component;
 import org.tdl.vireo.service.EntityControlledVocabularyService;
 import org.tdl.vireo.service.SystemDataLoader;
 
 @Order(Ordered.HIGHEST_PRECEDENCE)
-@Component
-@Profile("!test")
-public class ApplicationInitialization implements CommandLineRunner {
+@Component("ApplicationInitialization")
+public class ApplicationInitialization implements InitializingBean {
+
+    @Autowired
+    private Environment env;
 
     @Lazy
     @Autowired
@@ -24,11 +27,13 @@ public class ApplicationInitialization implements CommandLineRunner {
     private EntityControlledVocabularyService entityControlledVocabularyService;
 
     @Override
-    public void run(String... args) throws Exception {
-        // load defaults first
-        systemDataLoader.loadSystemData();
-        // assumes one language defined in defaults
-        entityControlledVocabularyService.scanForEntityControlledVocabularies();
+    public void afterPropertiesSet() throws Exception {
+        if (env.acceptsProfiles(Profiles.of("!isolated-test"))) {
+            // load defaults first
+            systemDataLoader.loadSystemData();
+            // assumes one language defined in defaults
+            entityControlledVocabularyService.scanForEntityControlledVocabularies();
+        }
     }
 
 }

src/main/java/org/tdl/vireo/auth/controller/AuthController.java

@@ -133,7 +133,7 @@ public ApiResponse registration(@RequestBody(required = false) Map<String, Strin
             content = cryptoService.validateGenericToken(token, EMAIL_VERIFICATION_TYPE);
         } catch (InvalidKeyException | NoSuchAlgorithmException | NoSuchPaddingException | IllegalBlockSizeException | BadPaddingException e) {
             logger.debug("Unable to validate token!");
-            return new ApiResponse(ERROR, "Unable to generate token!");
+            return new ApiResponse(ERROR, "Unable to validate token!");
         }
 
         String tokenCreateTime = content[0];

src/main/java/org/tdl/vireo/config/AppEmailConfig.java

@@ -9,7 +9,7 @@
 import edu.tamu.weaver.email.service.EmailSender;
 
 @Configuration
-@Profile(value = { "!test" })
+@Profile(value = { "!test", "!isolated-test" })
 public class AppEmailConfig extends WeaverEmailConfig {
 
     @Bean

src/main/java/org/tdl/vireo/controller/OrganizationController.java

@@ -9,15 +9,10 @@
 import static org.springframework.beans.BeanUtils.copyProperties;
 import static org.springframework.web.bind.annotation.RequestMethod.POST;
 
-import com.fasterxml.jackson.annotation.JsonView;
-import com.fasterxml.jackson.databind.JsonNode;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import edu.tamu.weaver.response.ApiResponse;
-import edu.tamu.weaver.response.ApiView;
-import edu.tamu.weaver.validation.aspect.annotation.WeaverValidatedModel;
-import edu.tamu.weaver.validation.aspect.annotation.WeaverValidation;
+import java.util.HashMap;
 import java.util.Map;
 import java.util.Optional;
+
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.security.access.prepost.PreAuthorize;
 import org.springframework.web.bind.annotation.PathVariable;
@@ -47,6 +42,15 @@
 import org.tdl.vireo.view.ShallowOrganizationView;
 import org.tdl.vireo.view.TreeOrganizationView;
 
+import com.fasterxml.jackson.annotation.JsonView;
+import com.fasterxml.jackson.databind.JsonNode;
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import edu.tamu.weaver.response.ApiResponse;
+import edu.tamu.weaver.response.ApiView;
+import edu.tamu.weaver.validation.aspect.annotation.WeaverValidatedModel;
+import edu.tamu.weaver.validation.aspect.annotation.WeaverValidation;
+
 @RestController
 @RequestMapping("/organization")
 public class OrganizationController {
@@ -253,6 +257,10 @@ public ApiResponse addEmailWorkflowRule(@PathVariable Long requestingOrgId, @Req
             EmailWorkflowRule newEmailWorkflowRule = emailWorkflowRuleRepo.create(submissionStatus, emailRecipient, emailTemplate);
             org.addEmailWorkflowRule(newEmailWorkflowRule);
             organizationRepo.update(org);
+
+            HashMap<String, Object> payload = new HashMap<String, Object>();
+            payload.put("id", newEmailWorkflowRule.getId());
+            response.setPayload(payload);
         }
 
         return response;