Fix documentation issues introduced by refactoring #189

	name: Build & Publish Documentation

	on:
	push:
	branches:
	- main

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Set up python
	id: setup-python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	version: 1.8.3
	virtualenvs-create: true
	virtualenvs-in-project: true
	installer-parallel: true
	- name: Verify poetry installation
	run: poetry --version
	- name: Install amici dependencies
	run: \|
	sudo apt update
	sudo apt install -y swig
	sudo apt install -y libblas-dev
	sudo apt install -y libatlas-base-dev
	sudo apt install -y libhdf5-dev
	- name: Load cached venv
	id: cached-poetry-dependencies
	uses: actions/cache@v4
	with:
	path: .venv
	key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}
	- name: Install dependencies
	run: poetry install --no-interaction --with=dev --extras=sbml
	if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
	- name: Build documentation
	run: \|
	cd docs
	poetry run make html
	- name: Upload artifacts
	uses: actions/upload-artifact@v3
	with:
	name: html-docs
	path: docs/build/html/
	- name: Deploy
	uses: peaceiris/actions-gh-pages@v3
	if: github.ref == 'refs/heads/main'
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: docs/build/html

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