Recent updates to temp3 and two_backbones

SynBioDex · May 7, 2024 · 4a8ade0 · 4a8ade0
1 parent cb76a96
commit 4a8ade0
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Showing 8 changed files with 1,031 additions and 295 deletions.
diff --git a/SBOL3_simple_library4.nt b/SBOL3_simple_library4.nt
diff --git a/SBOL3_simple_library4.xlsx b/SBOL3_simple_library4.xlsx
diff --git a/simple_library.nt b/simple_library.nt
diff --git a/temp.py b/temp.py
@@ -1,12 +1,17 @@
-import excel2sbol.converter as conv
+# import excel2sbol.converter as conv
+import sys
 import os
 
+sys.path.insert(0, '/Users/william/Desktop/Code/GLL/Excel-to-SBOL/excel2sbol/excel2sbol')
+import converter as conv
 
+
+cwd = os.chdir('/Users/william/Desktop/Code/GLL/Excel-utilities')
 cwd = os.getcwd()
 print(cwd)
 
-file_path_in = os.path.join(cwd, 'SBOL3_simple_library4.xlsx')
-file_path_out = os.path.join(cwd, 'SBOL3_simple_library4.nt')
+file_path_in = os.path.join(cwd, 'two_backbones.xlsx')
+file_path_out = os.path.join(cwd, 'two_backbones.nt')
 
 conv.converter(file_path_in, file_path_out, file_format='sorted nt')
 # conv.converter(file_path_in, file_path_out, sbol_version=2,

diff --git a/temp3.py b/temp3.py
@@ -24,7 +24,7 @@ def updateVariableFeatures(doc, combdev):
         if obj == None or type(obj) != sbol3.combderiv.CombinatorialDerivation:
             ins = False
             obj = doc.find(item)
-            obj.strategy = sbol3.SBOL_ENUMERATE
+            obj.strategy = sbol3.SBOL_ENUMERATE # Check This line
 
         if doc.find(f'{insert}_template'):
             template = doc.find(f'{insert}_template')
@@ -37,13 +37,16 @@ def updateVariableFeatures(doc, combdev):
 
             # Go through and ensure that variantderivations are correct
 
-            removeList = []
-            addList = []
+            removeList = [] # List of variants to remove
+            addList = [] # List of variants to add as a subcomponent
+
+            # combdev list of changed from combinatorial derivations to components
             for variant in variable_feature.variants:
                 if str(variant) in combdev:
                     addList.append(variant)
                     removeList.append(variant)
 
+            # Check to see if correct reasoning but works
             for item in removeList:
                 variable_feature.variants.remove(item)
             for item in addList:
@@ -185,6 +188,7 @@ def updateVariableFeatures(doc, combdev):
                 part += 1
 
             # Clear the part # from the subcomponents
+            # Check this
 
             for feature in list(template.features):
                 if type(feature) == sbol3.SubComponent:
@@ -319,6 +323,7 @@ def convCombDeriv(file_path_in):
             tempcombdev[item] = dictionaryObj[item]
 
     # 1. Check to see if the object has an inserted construct
+    # Go through all combinatorial derivations - if has insert, remove insert from tempcombdev and add top level object to combdev
     for item in dictionaryObj:
         ins = item + "_ins"
         if ins in dictionaryObj:
@@ -349,7 +354,7 @@ def convCombDeriv(file_path_in):
                     combdev[item] = tempcombdev[item]
                     break
 
-
+    # Check if need to remove from tempcombdev after adding to combdev
 
     # 4. For every item in tempcombdev (Not a combinatorial derivation), convert it to a component
 
@@ -404,10 +409,15 @@ def convCombDeriv(file_path_in):
         doc.add(newComponents[item])
 
     # 7. Update the variable features in each of the combinatorial derivation objects if there are conversions
+    # Might have to update to make sure that it's the correct logic (If there are any changes to combinatorial derivations)
     if tempcombdev != combdev:
         updateVariableFeatures(doc, combdev)
 
     # 8. Update the uri references
+    # Not sure if this is necessary - doesn't seem to make a difference
+    # Take a new dictionary mapping the identity of the old objects to the newly created components
+    # Plug it into the helper function to update the uri refs (Not sure if does anything)
+
     oldToNew = {}
 
     for item in tempcombdev:

diff --git a/two_backbones.nt b/two_backbones.nt
@@ -108,7 +108,7 @@
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#description> "Collection from the Basic Parts sheet" .
+<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#description> "Designs for round 1 if iGEM 2021 calibration experimentation" .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#displayId> "Basic_Parts" .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://parts.igem.org/I20270> .
@@ -118,17 +118,16 @@
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://parts.igem.org/J364007> .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://parts.igem.org/J364009> .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://parts.igem.org/R0040> .
-<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/> .
-<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/pOpen_v4> .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/pSB1C3> .
-<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#name> "Basic Parts" .
+<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#member> <https://freegenes.github.io/genbank/BBF10K_000589> .
+<http://sbolstandard.org/testfiles/Basic_Parts> <http://sbols.org/v3#name> "Fluorescence calibration basic parts" .
 <http://sbolstandard.org/testfiles/Basic_Parts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Collection> .
-<http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#description> "Collection from the Composite Parts sheet" .
+<http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#description> "Designs for round 1 if iGEM 2021 calibration experimentation" .
 <http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#displayId> "Composite_Parts" .
 <http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/Backbone_variants> .
 <http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/Two_by_six> .
-<http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#name> "Composite Parts" .
+<http://sbolstandard.org/testfiles/Composite_Parts> <http://sbols.org/v3#name> "Fluorescence calibration devices" .
 <http://sbolstandard.org/testfiles/Composite_Parts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Collection> .
 <http://sbolstandard.org/testfiles/FinalProducts> <http://sbols.org/v3#description> "Final products desired for actual fabrication" .
 <http://sbolstandard.org/testfiles/FinalProducts> <http://sbols.org/v3#displayId> "FinalProducts" .
@@ -152,8 +151,8 @@
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#cardinality> <http://sbols.org/v3#one> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#displayId> "VariableFeature2" .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variable> <http://sbolstandard.org/testfiles/Two_by_six_template/LocalSubComponent2> .
-<http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <http://sbolstandard.org/testfiles/pOpen_v4> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <http://sbolstandard.org/testfiles/pSB1C3> .
+<http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <https://freegenes.github.io/genbank/BBF10K_000589> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#VariableFeature> .
 <http://sbolstandard.org/testfiles/Two_by_six> <http://sbols.org/v3#displayId> "Two_by_six" .
 <http://sbolstandard.org/testfiles/Two_by_six> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
@@ -215,23 +214,17 @@
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#displayId> "pOpen_v4" .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#name> "pOpen_v4" .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#type> <http://purl.obolibrary.org/obo/SO_0000988> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#description> "pMB1 replicon, 100-300 copy" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#displayId> "pSB1C3" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#name> "pSB1C3" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
-<http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#type> <http://purl.obolibrary.org/obo/SO_0000988> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#displayId> "testfiles" .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#name> "" .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
-<http://sbolstandard.org/testfiles> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#displayId> "BBF10K_000589" .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#hasNamespace> <https://freegenes.github.io/genbank> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#name> "pOpen_v4" .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://www.w3.org/ns/prov#wasDerivedFrom> <https://freegenes.github.io/genbank/BBF10K_000589.gb> .
diff --git a/two_backbones.xlsx b/two_backbones.xlsx
diff --git a/two_backbones_ud.nt b/two_backbones_ud.nt
@@ -110,7 +110,7 @@
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/Backbone_variants_template> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#description> "Collection from the Basic Parts sheet" .
+<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#description> "Designs for round 1 if iGEM 2021 calibration experimentation" .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#displayId> "BasicParts" .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://parts.igem.org/I20270> .
@@ -120,17 +120,16 @@
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://parts.igem.org/J364007> .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://parts.igem.org/J364009> .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://parts.igem.org/R0040> .
-<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/> .
-<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/pOpen_v4> .
 <http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/pSB1C3> .
-<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#name> "Basic Parts" .
+<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#member> <https://freegenes.github.io/genbank/BBF10K_000589> .
+<http://sbolstandard.org/testfiles/BasicParts> <http://sbols.org/v3#name> "Fluorescence calibration basic parts" .
 <http://sbolstandard.org/testfiles/BasicParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Collection> .
-<http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#description> "Collection from the Composite Parts sheet" .
+<http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#description> "Designs for round 1 if iGEM 2021 calibration experimentation" .
 <http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#displayId> "CompositeParts" .
 <http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/Backbone_variants_ins> .
 <http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#member> <http://sbolstandard.org/testfiles/Two_by_six_ins> .
-<http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#name> "Composite Parts" .
+<http://sbolstandard.org/testfiles/CompositeParts> <http://sbols.org/v3#name> "Fluorescence calibration devices" .
 <http://sbolstandard.org/testfiles/CompositeParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Collection> .
 <http://sbolstandard.org/testfiles/FinalProducts> <http://sbols.org/v3#description> "Final products desired for actual fabrication" .
 <http://sbolstandard.org/testfiles/FinalProducts> <http://sbols.org/v3#displayId> "FinalProducts" .
@@ -154,8 +153,8 @@
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#cardinality> <http://sbols.org/v3#one> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#displayId> "VariableFeature2" .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variable> <http://sbolstandard.org/testfiles/Two_by_six_template/LocalSubComponent2> .
-<http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <http://sbolstandard.org/testfiles/pOpen_v4> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <http://sbolstandard.org/testfiles/pSB1C3> .
+<http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://sbols.org/v3#variant> <https://freegenes.github.io/genbank/BBF10K_000589> .
 <http://sbolstandard.org/testfiles/Two_by_six/VariableFeature2> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#VariableFeature> .
 <http://sbolstandard.org/testfiles/Two_by_six> <http://sbols.org/v3#displayId> "Two_by_six" .
 <http://sbolstandard.org/testfiles/Two_by_six> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
@@ -218,24 +217,18 @@
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/Two_by_six_template> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#description> "" .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#displayId> "pOpen_v4" .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#name> "pOpen_v4" .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#type> <http://purl.obolibrary.org/obo/SO_0000988> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
-<http://sbolstandard.org/testfiles/pOpen_v4> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#description> "pMB1 replicon, 100-300 copy" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#displayId> "pSB1C3" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#name> "pSB1C3" .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
-<http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#type> <http://purl.obolibrary.org/obo/SO_0000988> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
 <http://sbolstandard.org/testfiles/pSB1C3> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#displayId> "testfiles" .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#hasNamespace> <http://sbolstandard.org/testfiles> .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#name> "" .
-<http://sbolstandard.org/testfiles> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
-<http://sbolstandard.org/testfiles> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#description> "" .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#displayId> "BBF10K_000589" .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#hasNamespace> <https://freegenes.github.io/genbank> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#name> "pOpen_v4" .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000155> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
+<https://freegenes.github.io/genbank/BBF10K_000589> <http://www.w3.org/ns/prov#wasDerivedFrom> <https://freegenes.github.io/genbank/BBF10K_000589.gb> .