-
Notifications
You must be signed in to change notification settings - Fork 28
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch '3957_pr' into 3957_coldp_improvements
- Loading branch information
Showing
10 changed files
with
421 additions
and
135 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,96 @@ | ||
| # taxonID | ||
| # areaID | ||
| # area | ||
| # gazetteer | ||
| # status | ||
| # referenceID | ||
| # remarks | ||
| # | ||
| module Export::Coldp::Files::Distribution | ||
|
|
||
| def self.reference_id(content) | ||
| i = content.sources.pluck(:id) | ||
| return i.join(',') if i.any? | ||
| nil | ||
| end | ||
|
|
||
| def self.generate(otus, project_members, reference_csv = nil ) | ||
| CSV.generate(col_sep: "\t") do |csv| | ||
|
|
||
| csv << %w{ | ||
| taxonID | ||
| areaID | ||
| area | ||
| gazetteer | ||
| status | ||
| referenceID | ||
| modified | ||
| modifiedBy | ||
| remarks | ||
| } | ||
|
|
||
| otus.each do |o| | ||
| o.asserted_distributions.includes(:geographic_area).each do |ad| | ||
|
|
||
| ga = ad.geographic_area | ||
| if !ga.iso_3166_a3.blank? | ||
| gazetteer = 'iso' | ||
| area_id = ga.iso_3166_a3 | ||
| area = ga.iso_3166_a3 | ||
| elsif !ga.iso_3166_a2.blank? | ||
| gazetteer = 'iso' | ||
| area_id = ga.iso_3166_a2 | ||
| area = ga.iso_3166_a2 | ||
| elsif !ga.tdwgID.blank? | ||
| gazetteer = 'tdwg' | ||
| if ga.data_origin == 'tdwg_l3' or ga.data_origin == 'tdwg_l4' | ||
| area_id = ga.tdwgID.gsub(/^[0-9]{1,2}(.+)$/, '\1') # fixes mismatch in TW vs CoL TDWG level 3 & 4 identifiers | ||
| else | ||
| area_id = ga.tdwgID | ||
| end | ||
| area = area_id | ||
| else | ||
| gazetteer = 'text' | ||
| area_id = nil | ||
| area = ga.name | ||
| end | ||
|
|
||
| sources = ad.sources.load | ||
| reference_ids = sources.collect{|a| a.id} | ||
| csv << [ | ||
| o.id, | ||
| area_id, | ||
| area, | ||
| gazetteer, | ||
| nil, | ||
| reference_ids.first, # reference_id: only 1 distribution reference allowed | ||
| Export::Coldp.modified(ad[:updated_at]), # modified | ||
| Export::Coldp.modified_by(ad[:updated_by_id], project_members), # modified_by | ||
| nil | ||
| ] | ||
|
|
||
| Export::Coldp::Files::Reference.add_reference_rows(sources, reference_csv, project_members) if reference_csv | ||
| end | ||
| end | ||
|
|
||
| otus.joins("INNER JOIN contents ON contents.otu_id = otus.id | ||
| INNER JOIN controlled_vocabulary_terms ON controlled_vocabulary_terms.id = contents.topic_id") | ||
| .select("otus.id, contents.text, contents.updated_at, contents.updated_by_id") | ||
| .where("controlled_vocabulary_terms.name = 'Distribution text'").distinct.each do |o| | ||
| area = o.text | ||
|
|
||
| csv << [ | ||
| o.id, | ||
| nil, | ||
| area, | ||
| 'text', | ||
| nil, | ||
| nil, | ||
| Export::Coldp.modified(o.updated_at), | ||
| Export::Coldp.modified_by(o.updated_by_id, project_members), | ||
| nil | ||
| ] | ||
| end | ||
| end | ||
| end | ||
| end |
Oops, something went wrong.