Sage-Bionetworks · afwillia · Nov 2, 2023 · Oct 26, 2023 · Oct 26, 2023 · Oct 26, 2023
diff --git a/.github/workflows/validate-dcc-config.yml b/.github/workflows/validate-dcc-config.yml
@@ -0,0 +1,39 @@
+# ------------------------------------------------------------------------------
+# Validate a dcc config file against the dca_config schema
+# ------------------------------------------------------------------------------
+name: validate dcc config
+on:
+  push:
+    paths:
+      - 'dcc/*dca_config.json'
+      - 'test/*dca_config.json'
+      - 'schemas/dca_config.schema.json'
+  pull_request:
+    branches:
+      - 'main'
+      - 'staging'
+      - 'dev'
+    paths:
+      - 'dcc/*dca_config.json'
+      - 'test/*dca_config.json'
+      - 'schemas/dca_config.schema.json'
+
+jobs:
+  validate-dcc-config:
+    runs-on: ubuntu-latest
+    steps:
+      - id: files
+        uses: masesgroup/retrieve-changed-files@v3
+        with:
+          format: 'csv'
+      - id: filter_files
+        name: Filter files to dca_config.json files
+        run: |
+          echo "configs=$(echo ${{ steps.files.outputs.added_modified }} | tr ',' '\n' | grep dca_config\\.json | tr '\n' ',' | sed 's/\(.*\),/\1 /')" >> "$GITHUB_OUTPUT"
+      - uses: actions/checkout@v4
+      - name: Validate JSON
+        uses: docker://orrosenblatt/validate-json-action:latest
+        env:
+          INPUT_SCHEMA: schemas/dca_config.schema.json
+          INPUT_JSONS: ${{ steps.filter_files.outputs.configs }}
+
diff --git a/.github/workflows/validate-template-config.yml b/.github/workflows/validate-template-config.yml
@@ -0,0 +1,39 @@
+# ------------------------------------------------------------------------------
+# Validate a dca template config file against the dca template config schema
+# ------------------------------------------------------------------------------
+name: Validate Template Config
+on:
+  push:
+    paths:
+      - 'dcc/*dca-template-config.json'
+      - 'test/*dca-template-config.json'
+      - 'schemas/dca_template_config.schema.json'
+  pull_request:
+    branches:
+      - 'main'
+      - 'staging'
+      - 'dev'
+    paths:
+      - 'dcc/*dca-template-config.json'
+      - 'test/*dca-template-config.json'
+      - 'schemas/dca_template_config.schema.json'
+
+jobs:
+  validate-template-config:
+    runs-on: ubuntu-latest
+    steps:
+      - id: files
+        uses: masesgroup/retrieve-changed-files@v3
+        with:
+          format: 'csv'
+      - id: filter_files
+        name: Filter files to dca-template-config.json files
+        run: |
+          echo "configs=$(echo ${{ steps.files.outputs.added_modified }} | tr ',' '\n' | grep dca-template-config\\.json | tr '\n' ',' | sed 's/\(.*\),/\1 /')" >> "$GITHUB_OUTPUT"
+      - uses: actions/checkout@v4
+      - name: Validate JSON
+        if: ${{ steps.filter_files.outputs.configs != '' }}
+        uses: docker://orrosenblatt/validate-json-action:latest
+        env:
+          INPUT_SCHEMA: schemas/dca_template_config.schema.json
+          INPUT_JSONS: ${{ steps.filter_files.outputs.configs }}
diff --git a/.github/workflows/validate-tenants-config.yml b/.github/workflows/validate-tenants-config.yml
@@ -0,0 +1,28 @@
+# ------------------------------------------------------------------------------
+# Validate the tenants.json file against the tenants.schema.json schema
+# ------------------------------------------------------------------------------
+name: validate tenants config
+on:
+  push:
+    paths:
+      - 'tenants.json'
+      - 'schemas/tenants.schema.json'
+  pull_request:
+    branches:
+      - 'main'
+      - 'staging'
+      - 'dev'
+    paths:
+      - 'tenants.json'
+      - 'schemas/tenants.schema.json'
+
+jobs:
+  validate-tenants-config:
+    runs-on: ubuntu-latest
+    steps:        
+      - uses: actions/checkout@v3
+      - name: Validate JSON
+        uses: docker://orrosenblatt/validate-json-action:latest
+        env:
+          INPUT_SCHEMA: schemas/tenants.schema.json
+          INPUT_JSONS: tenants.json
diff --git a/ADKP/ADKnowledgePortal.png → dcc/ADKP/ADKnowledgePortal.png b/ADKP/ADKnowledgePortal.png → dcc/ADKP/ADKnowledgePortal.png
diff --git a/dcc/ADKP/adkp_dca_config.json b/dcc/ADKP/adkp_dca_config.json
@@ -0,0 +1,19 @@
+{
+  "project_name":"AD Knowledge Portal",
+  "synapse_asset_view":"syn51324810",
+  "data_model_url":"https://raw.githubusercontent.com/adknowledgeportal/data-models/main/divco.data.model.v1.jsonld",
+  "template_menu_config_file":"dcc/ADKP/dca-template-config.json",
+  "logo_location":"dcc/ADKP/ADKnowledgePortal.png",
+  "logo_link":"https://adknowledgeportal.synapse.org",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"file_only",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/ADKP/dca-template-config.json → dcc/ADKP/dca-template-config.json b/ADKP/dca-template-config.json → dcc/ADKP/dca-template-config.json
diff --git a/dcc/BTC/btc_dca_config.json b/dcc/BTC/btc_dca_config.json
@@ -0,0 +1,17 @@
+{
+  "project_name":"BTC DCC",
+  "synapse_asset_view":"syn51407795",
+  "data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/btc-data-models/main/btc.model.jsonld",
+  "template_menu_config_file":"dcc/BTC/dca-template-config.json",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e72",
+  "sidebar_col":"#191920"
+}
diff --git a/BTC/dca-template-config.json → dcc/BTC/dca-template-config.json b/BTC/dca-template-config.json → dcc/BTC/dca-template-config.json
diff --git a/BTC/templates/BulkRNA-seqAssay.xlsx → dcc/BTC/templates/BulkRNA-seqAssay.xlsx b/BTC/templates/BulkRNA-seqAssay.xlsx → dcc/BTC/templates/BulkRNA-seqAssay.xlsx
diff --git a/EL/dca-template-config.json → dcc/EL/dca-template-config.json b/EL/dca-template-config.json → dcc/EL/dca-template-config.json
diff --git a/dcc/EL/el_dca_config.json b/dcc/EL/el_dca_config.json
@@ -0,0 +1,17 @@
+{
+  "project_name":"EL",
+  "synapse_asset_view":"syn51753858",
+  "data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/ELITE-data-models/main/example.model.jsonld",
+  "template_menu_config_file":"dcc/EL/dca-template-config.json",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/GF/dca-template-config.json → dcc/GF/dca-template-config.json b/GF/dca-template-config.json → dcc/GF/dca-template-config.json
diff --git a/dcc/GF/gf_dca_config.json b/dcc/GF/gf_dca_config.json
@@ -0,0 +1,17 @@
+{
+  "project_name":"Gray Foundation",
+  "synapse_asset_view":"syn28142805",
+  "data_model_url":"https://raw.githubusercontent.com/gf-dcc/data-model/v1.1.0-rc/GF.jsonld",
+  "template_menu_config_file":"dcc/GF/dca-template-config.json",
+  "manifest_output_format":"google_sheet",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":true,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/HTAN/HTAN_text_logo.png → dcc/HTAN/HTAN_text_logo.png b/HTAN/HTAN_text_logo.png → dcc/HTAN/HTAN_text_logo.png
diff --git a/HTAN/dca-template-config.json → dcc/HTAN/dca-template-config.json b/HTAN/dca-template-config.json → dcc/HTAN/dca-template-config.json
diff --git a/dcc/HTAN/htan_dca_config.json b/dcc/HTAN/htan_dca_config.json
@@ -0,0 +1,19 @@
+{
+  "project_name":"HTAN All Projects",
+  "synapse_asset_view":"syn20446927",
+  "data_model_url":"https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld",
+  "template_menu_config_file":"dcc/HTAN/dca-template-config.json",
+  "logo_location":"dcc/HTAN/HTAN_text_logo.png",
+  "logo_link":"https://humantumoratlas.org",
+  "manifest_output_format":"google_sheet",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"file_only",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#605ca8",
+  "secondary_col":"#5F008C",
+  "sidebar_col":"#191919"
+}
diff --git a/...patialTranscriptomics-AuxiliaryFiles.xlsx → ...patialTranscriptomics-AuxiliaryFiles.xlsx b/...patialTranscriptomics-AuxiliaryFiles.xlsx → ...patialTranscriptomics-AuxiliaryFiles.xlsx
diff --git a/...SpatialTranscriptomics-RNA-seqLevel1.xlsx → ...SpatialTranscriptomics-RNA-seqLevel1.xlsx b/...SpatialTranscriptomics-RNA-seqLevel1.xlsx → ...SpatialTranscriptomics-RNA-seqLevel1.xlsx
diff --git a/...SpatialTranscriptomics-RNA-seqLevel2.xlsx → ...SpatialTranscriptomics-RNA-seqLevel2.xlsx b/...SpatialTranscriptomics-RNA-seqLevel2.xlsx → ...SpatialTranscriptomics-RNA-seqLevel2.xlsx
diff --git a/...SpatialTranscriptomics-RNA-seqLevel3.xlsx → ...SpatialTranscriptomics-RNA-seqLevel3.xlsx b/...SpatialTranscriptomics-RNA-seqLevel3.xlsx → ...SpatialTranscriptomics-RNA-seqLevel3.xlsx
diff --git a/...ates/AcuteLymphoblasticLeukemiaTier3.xlsx → ...ates/AcuteLymphoblasticLeukemiaTier3.xlsx b/...ates/AcuteLymphoblasticLeukemiaTier3.xlsx → ...ates/AcuteLymphoblasticLeukemiaTier3.xlsx
diff --git a/HTAN/templates/Biospecimen.xlsx → dcc/HTAN/templates/Biospecimen.xlsx b/HTAN/templates/Biospecimen.xlsx → dcc/HTAN/templates/Biospecimen.xlsx
diff --git a/HTAN/templates/BreastCancerTier3.xlsx → dcc/HTAN/templates/BreastCancerTier3.xlsx b/HTAN/templates/BreastCancerTier3.xlsx → dcc/HTAN/templates/BreastCancerTier3.xlsx
diff --git a/.../templates/BulkMethylation-seqLevel1.xlsx → .../templates/BulkMethylation-seqLevel1.xlsx b/.../templates/BulkMethylation-seqLevel1.xlsx → .../templates/BulkMethylation-seqLevel1.xlsx
diff --git a/.../templates/BulkMethylation-seqLevel2.xlsx → .../templates/BulkMethylation-seqLevel2.xlsx b/.../templates/BulkMethylation-seqLevel2.xlsx → .../templates/BulkMethylation-seqLevel2.xlsx
diff --git a/.../templates/BulkMethylation-seqLevel3.xlsx → .../templates/BulkMethylation-seqLevel3.xlsx b/.../templates/BulkMethylation-seqLevel3.xlsx → .../templates/BulkMethylation-seqLevel3.xlsx
diff --git a/HTAN/templates/BulkRNA-seqLevel1.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel1.xlsx b/HTAN/templates/BulkRNA-seqLevel1.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel1.xlsx
diff --git a/HTAN/templates/BulkRNA-seqLevel2.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel2.xlsx b/HTAN/templates/BulkRNA-seqLevel2.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel2.xlsx
diff --git a/HTAN/templates/BulkRNA-seqLevel3.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel3.xlsx b/HTAN/templates/BulkRNA-seqLevel3.xlsx → dcc/HTAN/templates/BulkRNA-seqLevel3.xlsx
diff --git a/HTAN/templates/BulkWESLevel1.xlsx → dcc/HTAN/templates/BulkWESLevel1.xlsx b/HTAN/templates/BulkWESLevel1.xlsx → dcc/HTAN/templates/BulkWESLevel1.xlsx
diff --git a/HTAN/templates/BulkWESLevel2.xlsx → dcc/HTAN/templates/BulkWESLevel2.xlsx b/HTAN/templates/BulkWESLevel2.xlsx → dcc/HTAN/templates/BulkWESLevel2.xlsx
diff --git a/HTAN/templates/BulkWESLevel3.xlsx → dcc/HTAN/templates/BulkWESLevel3.xlsx b/HTAN/templates/BulkWESLevel3.xlsx → dcc/HTAN/templates/BulkWESLevel3.xlsx
diff --git a/HTAN/templates/ClinicalDataTier2.xlsx → dcc/HTAN/templates/ClinicalDataTier2.xlsx b/HTAN/templates/ClinicalDataTier2.xlsx → dcc/HTAN/templates/ClinicalDataTier2.xlsx
diff --git a/HTAN/templates/ColorectalCancerTier3.xlsx → ...HTAN/templates/ColorectalCancerTier3.xlsx b/HTAN/templates/ColorectalCancerTier3.xlsx → ...HTAN/templates/ColorectalCancerTier3.xlsx
diff --git a/HTAN/templates/Demographics.xlsx → dcc/HTAN/templates/Demographics.xlsx b/HTAN/templates/Demographics.xlsx → dcc/HTAN/templates/Demographics.xlsx
diff --git a/HTAN/templates/Diagnosis.xlsx → dcc/HTAN/templates/Diagnosis.xlsx b/HTAN/templates/Diagnosis.xlsx → dcc/HTAN/templates/Diagnosis.xlsx
diff --git a/HTAN/templates/Exposure.xlsx → dcc/HTAN/templates/Exposure.xlsx b/HTAN/templates/Exposure.xlsx → dcc/HTAN/templates/Exposure.xlsx
diff --git a/HTAN/templates/FamilyHistory.xlsx → dcc/HTAN/templates/FamilyHistory.xlsx b/HTAN/templates/FamilyHistory.xlsx → dcc/HTAN/templates/FamilyHistory.xlsx
diff --git a/HTAN/templates/FollowUp.xlsx → dcc/HTAN/templates/FollowUp.xlsx b/HTAN/templates/FollowUp.xlsx → dcc/HTAN/templates/FollowUp.xlsx
diff --git a/HTAN/templates/HI-C-seqLevel1.xlsx → dcc/HTAN/templates/HI-C-seqLevel1.xlsx b/HTAN/templates/HI-C-seqLevel1.xlsx → dcc/HTAN/templates/HI-C-seqLevel1.xlsx
diff --git a/HTAN/templates/HI-C-seqLevel2.xlsx → dcc/HTAN/templates/HI-C-seqLevel2.xlsx b/HTAN/templates/HI-C-seqLevel2.xlsx → dcc/HTAN/templates/HI-C-seqLevel2.xlsx
diff --git a/HTAN/templates/HI-C-seqLevel3.xlsx → dcc/HTAN/templates/HI-C-seqLevel3.xlsx b/HTAN/templates/HI-C-seqLevel3.xlsx → dcc/HTAN/templates/HI-C-seqLevel3.xlsx
diff --git a/HTAN/templates/HTANRPPAAntibodyTable.xlsx → ...HTAN/templates/HTANRPPAAntibodyTable.xlsx b/HTAN/templates/HTANRPPAAntibodyTable.xlsx → ...HTAN/templates/HTANRPPAAntibodyTable.xlsx
diff --git a/HTAN/templates/ImagingLevel1.xlsx → dcc/HTAN/templates/ImagingLevel1.xlsx b/HTAN/templates/ImagingLevel1.xlsx → dcc/HTAN/templates/ImagingLevel1.xlsx
diff --git a/HTAN/templates/ImagingLevel2.xlsx → dcc/HTAN/templates/ImagingLevel2.xlsx b/HTAN/templates/ImagingLevel2.xlsx → dcc/HTAN/templates/ImagingLevel2.xlsx
diff --git a/HTAN/templates/ImagingLevel3Channels.xlsx → ...HTAN/templates/ImagingLevel3Channels.xlsx b/HTAN/templates/ImagingLevel3Channels.xlsx → ...HTAN/templates/ImagingLevel3Channels.xlsx
diff --git a/HTAN/templates/ImagingLevel3Image.xlsx → dcc/HTAN/templates/ImagingLevel3Image.xlsx b/HTAN/templates/ImagingLevel3Image.xlsx → dcc/HTAN/templates/ImagingLevel3Image.xlsx
diff --git a/.../templates/ImagingLevel3Segmentation.xlsx → .../templates/ImagingLevel3Segmentation.xlsx b/.../templates/ImagingLevel3Segmentation.xlsx → .../templates/ImagingLevel3Segmentation.xlsx
diff --git a/HTAN/templates/ImagingLevel4.xlsx → dcc/HTAN/templates/ImagingLevel4.xlsx b/HTAN/templates/ImagingLevel4.xlsx → dcc/HTAN/templates/ImagingLevel4.xlsx
diff --git a/HTAN/templates/LungCancerTier3.xlsx → dcc/HTAN/templates/LungCancerTier3.xlsx b/HTAN/templates/LungCancerTier3.xlsx → dcc/HTAN/templates/LungCancerTier3.xlsx
diff --git a/...plates/MassSpectrometryAuxiliaryFile.xlsx → ...plates/MassSpectrometryAuxiliaryFile.xlsx b/...plates/MassSpectrometryAuxiliaryFile.xlsx → ...plates/MassSpectrometryAuxiliaryFile.xlsx
diff --git a/HTAN/templates/MassSpectrometryLevel1.xlsx → ...TAN/templates/MassSpectrometryLevel1.xlsx b/HTAN/templates/MassSpectrometryLevel1.xlsx → ...TAN/templates/MassSpectrometryLevel1.xlsx
diff --git a/HTAN/templates/MassSpectrometryLevel2.xlsx → ...TAN/templates/MassSpectrometryLevel2.xlsx b/HTAN/templates/MassSpectrometryLevel2.xlsx → ...TAN/templates/MassSpectrometryLevel2.xlsx
diff --git a/HTAN/templates/MassSpectrometryLevel3.xlsx → ...TAN/templates/MassSpectrometryLevel3.xlsx b/HTAN/templates/MassSpectrometryLevel3.xlsx → ...TAN/templates/MassSpectrometryLevel3.xlsx
diff --git a/HTAN/templates/MassSpectrometryLevel4.xlsx → ...TAN/templates/MassSpectrometryLevel4.xlsx b/HTAN/templates/MassSpectrometryLevel4.xlsx → ...TAN/templates/MassSpectrometryLevel4.xlsx
diff --git a/HTAN/templates/MelanomaTier3.xlsx → dcc/HTAN/templates/MelanomaTier3.xlsx b/HTAN/templates/MelanomaTier3.xlsx → dcc/HTAN/templates/MelanomaTier3.xlsx
diff --git a/HTAN/templates/MolecularTest.xlsx → dcc/HTAN/templates/MolecularTest.xlsx b/HTAN/templates/MolecularTest.xlsx → dcc/HTAN/templates/MolecularTest.xlsx
diff --git a/...emplates/NeuroblastomaandGliomaTier3.xlsx → ...emplates/NeuroblastomaandGliomaTier3.xlsx b/...emplates/NeuroblastomaandGliomaTier3.xlsx → ...emplates/NeuroblastomaandGliomaTier3.xlsx
diff --git a/HTAN/templates/OtherAssay.xlsx → dcc/HTAN/templates/OtherAssay.xlsx b/HTAN/templates/OtherAssay.xlsx → dcc/HTAN/templates/OtherAssay.xlsx
diff --git a/HTAN/templates/OvarianCancerTier3.xlsx → dcc/HTAN/templates/OvarianCancerTier3.xlsx b/HTAN/templates/OvarianCancerTier3.xlsx → dcc/HTAN/templates/OvarianCancerTier3.xlsx
diff --git a/HTAN/templates/PancreaticCancerTier3.xlsx → ...HTAN/templates/PancreaticCancerTier3.xlsx b/HTAN/templates/PancreaticCancerTier3.xlsx → ...HTAN/templates/PancreaticCancerTier3.xlsx
diff --git a/HTAN/templates/Patient.xlsx → dcc/HTAN/templates/Patient.xlsx b/HTAN/templates/Patient.xlsx → dcc/HTAN/templates/Patient.xlsx
diff --git a/HTAN/templates/ProstateCancerTier3.xlsx → dcc/HTAN/templates/ProstateCancerTier3.xlsx b/HTAN/templates/ProstateCancerTier3.xlsx → dcc/HTAN/templates/ProstateCancerTier3.xlsx
diff --git a/HTAN/templates/PublicationManifest.xlsx → dcc/HTAN/templates/PublicationManifest.xlsx b/HTAN/templates/PublicationManifest.xlsx → dcc/HTAN/templates/PublicationManifest.xlsx
diff --git a/HTAN/templates/RPPALevel2.xlsx → dcc/HTAN/templates/RPPALevel2.xlsx b/HTAN/templates/RPPALevel2.xlsx → dcc/HTAN/templates/RPPALevel2.xlsx
diff --git a/HTAN/templates/RPPALevel3.xlsx → dcc/HTAN/templates/RPPALevel3.xlsx b/HTAN/templates/RPPALevel3.xlsx → dcc/HTAN/templates/RPPALevel3.xlsx
diff --git a/HTAN/templates/RPPALevel4.xlsx → dcc/HTAN/templates/RPPALevel4.xlsx b/HTAN/templates/RPPALevel4.xlsx → dcc/HTAN/templates/RPPALevel4.xlsx
diff --git a/HTAN/templates/SRRSBiospecimen.xlsx → dcc/HTAN/templates/SRRSBiospecimen.xlsx b/HTAN/templates/SRRSBiospecimen.xlsx → dcc/HTAN/templates/SRRSBiospecimen.xlsx
diff --git a/HTAN/templates/SRRSClinicalDataTier2.xlsx → ...HTAN/templates/SRRSClinicalDataTier2.xlsx b/HTAN/templates/SRRSClinicalDataTier2.xlsx → ...HTAN/templates/SRRSClinicalDataTier2.xlsx
diff --git a/HTAN/templates/SRRSImagingLevel2.xlsx → dcc/HTAN/templates/SRRSImagingLevel2.xlsx b/HTAN/templates/SRRSImagingLevel2.xlsx → dcc/HTAN/templates/SRRSImagingLevel2.xlsx
diff --git a/HTAN/templates/SarcomaTier3.xlsx → dcc/HTAN/templates/SarcomaTier3.xlsx b/HTAN/templates/SarcomaTier3.xlsx → dcc/HTAN/templates/SarcomaTier3.xlsx
diff --git a/HTAN/templates/ScATAC-seqLevel1.xlsx → dcc/HTAN/templates/ScATAC-seqLevel1.xlsx b/HTAN/templates/ScATAC-seqLevel1.xlsx → dcc/HTAN/templates/ScATAC-seqLevel1.xlsx
diff --git a/HTAN/templates/ScATAC-seqLevel2.xlsx → dcc/HTAN/templates/ScATAC-seqLevel2.xlsx b/HTAN/templates/ScATAC-seqLevel2.xlsx → dcc/HTAN/templates/ScATAC-seqLevel2.xlsx
diff --git a/HTAN/templates/ScATAC-seqLevel3.xlsx → dcc/HTAN/templates/ScATAC-seqLevel3.xlsx b/HTAN/templates/ScATAC-seqLevel3.xlsx → dcc/HTAN/templates/ScATAC-seqLevel3.xlsx
diff --git a/HTAN/templates/ScATAC-seqLevel4.xlsx → dcc/HTAN/templates/ScATAC-seqLevel4.xlsx b/HTAN/templates/ScATAC-seqLevel4.xlsx → dcc/HTAN/templates/ScATAC-seqLevel4.xlsx
diff --git a/HTAN/templates/ScDNA-seqLevel1.xlsx → dcc/HTAN/templates/ScDNA-seqLevel1.xlsx b/HTAN/templates/ScDNA-seqLevel1.xlsx → dcc/HTAN/templates/ScDNA-seqLevel1.xlsx
diff --git a/HTAN/templates/ScDNA-seqLevel2.xlsx → dcc/HTAN/templates/ScDNA-seqLevel2.xlsx b/HTAN/templates/ScDNA-seqLevel2.xlsx → dcc/HTAN/templates/ScDNA-seqLevel2.xlsx
diff --git a/HTAN/templates/ScRNA-seqLevel1.xlsx → dcc/HTAN/templates/ScRNA-seqLevel1.xlsx b/HTAN/templates/ScRNA-seqLevel1.xlsx → dcc/HTAN/templates/ScRNA-seqLevel1.xlsx
diff --git a/HTAN/templates/ScRNA-seqLevel2.xlsx → dcc/HTAN/templates/ScRNA-seqLevel2.xlsx b/HTAN/templates/ScRNA-seqLevel2.xlsx → dcc/HTAN/templates/ScRNA-seqLevel2.xlsx
diff --git a/HTAN/templates/ScRNA-seqLevel3.xlsx → dcc/HTAN/templates/ScRNA-seqLevel3.xlsx b/HTAN/templates/ScRNA-seqLevel3.xlsx → dcc/HTAN/templates/ScRNA-seqLevel3.xlsx
diff --git a/HTAN/templates/ScRNA-seqLevel4.xlsx → dcc/HTAN/templates/ScRNA-seqLevel4.xlsx b/HTAN/templates/ScRNA-seqLevel4.xlsx → dcc/HTAN/templates/ScRNA-seqLevel4.xlsx
diff --git a/HTAN/templates/ScmC-seqLevel1.xlsx → dcc/HTAN/templates/ScmC-seqLevel1.xlsx b/HTAN/templates/ScmC-seqLevel1.xlsx → dcc/HTAN/templates/ScmC-seqLevel1.xlsx
diff --git a/HTAN/templates/ScmC-seqLevel2.xlsx → dcc/HTAN/templates/ScmC-seqLevel2.xlsx b/HTAN/templates/ScmC-seqLevel2.xlsx → dcc/HTAN/templates/ScmC-seqLevel2.xlsx
diff --git a/HTAN/templates/Therapy.xlsx → dcc/HTAN/templates/Therapy.xlsx b/HTAN/templates/Therapy.xlsx → dcc/HTAN/templates/Therapy.xlsx
diff --git a/dcc/INCLUDE/INCLUDE DCC Logo-01.png b/dcc/INCLUDE/INCLUDE DCC Logo-01.png
diff --git a/MC2/cckp_logo.png → dcc/MC2/cckp_logo.png b/MC2/cckp_logo.png → dcc/MC2/cckp_logo.png
diff --git a/MC2/dca-template-config.json → dcc/MC2/dca-template-config.json b/MC2/dca-template-config.json → dcc/MC2/dca-template-config.json
diff --git a/dcc/MC2/mc2_dca_config.json b/dcc/MC2/mc2_dca_config.json
@@ -0,0 +1,19 @@
+{
+  "project_name":"Cancer Complexity Knowledge Portal - Database",
+  "synapse_asset_view":"syn27210848",
+  "data_model_url":"https://raw.githubusercontent.com/mc2-center/data-models/main/mc2.model.jsonld",
+  "template_menu_config_file":"dcc/MC2/dca-template-config.json",
+  "logo_location":"dcc/MC2/cckp_logo.png",
+  "logo_link":"https://cancercomplexity.synapse.org",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":false,
+  "submit_table_manipulation":"upsert",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#407BA0",
+  "secondary_col":"#5BB0B5",
+  "sidebar_col":"#191919"
+}
diff --git a/MC2/templates/Consortium.xlsx → dcc/MC2/templates/Consortium.xlsx b/MC2/templates/Consortium.xlsx → dcc/MC2/templates/Consortium.xlsx
diff --git a/MC2/templates/ConsortiumGrant.xlsx → dcc/MC2/templates/ConsortiumGrant.xlsx b/MC2/templates/ConsortiumGrant.xlsx → dcc/MC2/templates/ConsortiumGrant.xlsx
diff --git a/MC2/templates/Dataset.xlsx → dcc/MC2/templates/Dataset.xlsx b/MC2/templates/Dataset.xlsx → dcc/MC2/templates/Dataset.xlsx
diff --git a/MC2/templates/DatasetGrant.xlsx → dcc/MC2/templates/DatasetGrant.xlsx b/MC2/templates/DatasetGrant.xlsx → dcc/MC2/templates/DatasetGrant.xlsx
diff --git a/MC2/templates/DatasetView.xlsx → dcc/MC2/templates/DatasetView.xlsx b/MC2/templates/DatasetView.xlsx → dcc/MC2/templates/DatasetView.xlsx
diff --git a/MC2/templates/EducationalResource.xlsx → dcc/MC2/templates/EducationalResource.xlsx b/MC2/templates/EducationalResource.xlsx → dcc/MC2/templates/EducationalResource.xlsx
diff --git a/MC2/templates/Grant.xlsx → dcc/MC2/templates/Grant.xlsx b/MC2/templates/Grant.xlsx → dcc/MC2/templates/Grant.xlsx
diff --git a/MC2/templates/GrantView.xlsx → dcc/MC2/templates/GrantView.xlsx b/MC2/templates/GrantView.xlsx → dcc/MC2/templates/GrantView.xlsx
diff --git a/MC2/templates/Institution.xlsx → dcc/MC2/templates/Institution.xlsx b/MC2/templates/Institution.xlsx → dcc/MC2/templates/Institution.xlsx
diff --git a/MC2/templates/InstitutionGrant.xlsx → dcc/MC2/templates/InstitutionGrant.xlsx b/MC2/templates/InstitutionGrant.xlsx → dcc/MC2/templates/InstitutionGrant.xlsx
diff --git a/MC2/templates/Person.xlsx → dcc/MC2/templates/Person.xlsx b/MC2/templates/Person.xlsx → dcc/MC2/templates/Person.xlsx
diff --git a/MC2/templates/PersonConsortium.xlsx → dcc/MC2/templates/PersonConsortium.xlsx b/MC2/templates/PersonConsortium.xlsx → dcc/MC2/templates/PersonConsortium.xlsx
diff --git a/MC2/templates/PersonView.xlsx → dcc/MC2/templates/PersonView.xlsx b/MC2/templates/PersonView.xlsx → dcc/MC2/templates/PersonView.xlsx
diff --git a/MC2/templates/Project.xlsx → dcc/MC2/templates/Project.xlsx b/MC2/templates/Project.xlsx → dcc/MC2/templates/Project.xlsx
diff --git a/MC2/templates/ProjectView.xlsx → dcc/MC2/templates/ProjectView.xlsx b/MC2/templates/ProjectView.xlsx → dcc/MC2/templates/ProjectView.xlsx
diff --git a/MC2/templates/Publication.xlsx → dcc/MC2/templates/Publication.xlsx b/MC2/templates/Publication.xlsx → dcc/MC2/templates/Publication.xlsx
diff --git a/MC2/templates/PublicationGrant.xlsx → dcc/MC2/templates/PublicationGrant.xlsx b/MC2/templates/PublicationGrant.xlsx → dcc/MC2/templates/PublicationGrant.xlsx
diff --git a/MC2/templates/PublicationView.xlsx → dcc/MC2/templates/PublicationView.xlsx b/MC2/templates/PublicationView.xlsx → dcc/MC2/templates/PublicationView.xlsx
diff --git a/MC2/templates/PublicationViewDCA.xlsx → dcc/MC2/templates/PublicationViewDCA.xlsx b/MC2/templates/PublicationViewDCA.xlsx → dcc/MC2/templates/PublicationViewDCA.xlsx
diff --git a/MC2/templates/Theme.xlsx → dcc/MC2/templates/Theme.xlsx b/MC2/templates/Theme.xlsx → dcc/MC2/templates/Theme.xlsx
diff --git a/MC2/templates/ThemeGrant.xlsx → dcc/MC2/templates/ThemeGrant.xlsx b/MC2/templates/ThemeGrant.xlsx → dcc/MC2/templates/ThemeGrant.xlsx
diff --git a/MC2/templates/Tool.xlsx → dcc/MC2/templates/Tool.xlsx b/MC2/templates/Tool.xlsx → dcc/MC2/templates/Tool.xlsx
diff --git a/MC2/templates/ToolGrant.xlsx → dcc/MC2/templates/ToolGrant.xlsx b/MC2/templates/ToolGrant.xlsx → dcc/MC2/templates/ToolGrant.xlsx
diff --git a/MC2/templates/ToolView.xlsx → dcc/MC2/templates/ToolView.xlsx b/MC2/templates/ToolView.xlsx → dcc/MC2/templates/ToolView.xlsx
diff --git a/NF-OSI/dca-template-config.json → dcc/NF-OSI/dca-template-config.json b/NF-OSI/dca-template-config.json → dcc/NF-OSI/dca-template-config.json
diff --git a/dcc/NF-OSI/nf-osi_dca_config.json b/dcc/NF-OSI/nf-osi_dca_config.json
@@ -0,0 +1,17 @@
+{
+  "project_name":"NF-OSI",
+  "synapse_asset_view":"syn16858331",
+  "data_model_url":"https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/v8.0.1/NF.jsonld",
+  "template_menu_config_file":"dcc/NF-OSI/dca-template-config.json",
+  "manifest_output_format":"google_sheet",
+  "manifest_use_annotations":true,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":true,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/VEOIBD/VEOIBD Logo.png → dcc/VEOIBD/VEOIBD Logo.png b/VEOIBD/VEOIBD Logo.png → dcc/VEOIBD/VEOIBD Logo.png
diff --git a/VEOIBD/dca-template-config.json → dcc/VEOIBD/dca-template-config.json b/VEOIBD/dca-template-config.json → dcc/VEOIBD/dca-template-config.json
diff --git a/...emplates/BiospecimenMetadataTemplate.xlsx → ...emplates/BiospecimenMetadataTemplate.xlsx b/...emplates/BiospecimenMetadataTemplate.xlsx → ...emplates/BiospecimenMetadataTemplate.xlsx
diff --git a/...ates/BulkRNASeqCountsFileAnnotations.xlsx → ...ates/BulkRNASeqCountsFileAnnotations.xlsx b/...ates/BulkRNASeqCountsFileAnnotations.xlsx → ...ates/BulkRNASeqCountsFileAnnotations.xlsx
diff --git a/...BD/templates/BulkRNAseqAssayTemplate.xlsx → ...BD/templates/BulkRNAseqAssayTemplate.xlsx b/...BD/templates/BulkRNAseqAssayTemplate.xlsx → ...BD/templates/BulkRNAseqAssayTemplate.xlsx
diff --git a/...mplates/BulkRNAseqRawFileAnnotations.xlsx → ...mplates/BulkRNAseqRawFileAnnotations.xlsx b/...mplates/BulkRNAseqRawFileAnnotations.xlsx → ...mplates/BulkRNAseqRawFileAnnotations.xlsx
diff --git a/...D/templates/ClinicalMetadataTemplate.xlsx → ...D/templates/ClinicalMetadataTemplate.xlsx b/...D/templates/ClinicalMetadataTemplate.xlsx → ...D/templates/ClinicalMetadataTemplate.xlsx
diff --git a/VEOIBD/templates/ScRNAseqAssayTemplate.xlsx → ...OIBD/templates/ScRNAseqAssayTemplate.xlsx b/VEOIBD/templates/ScRNAseqAssayTemplate.xlsx → ...OIBD/templates/ScRNAseqAssayTemplate.xlsx
diff --git a/dcc/VEOIBD/veoibd_dca_config.json b/dcc/VEOIBD/veoibd_dca_config.json
@@ -0,0 +1,19 @@
+{
+  "project_name":"VEOIBD",
+  "synapse_asset_view":"syn51397378",
+  "data_model_url":"https://raw.githubusercontent.com/VEOIBD/data_models/main/veoibd.data.model.jsonld",
+  "template_menu_config_file":"dcc/VEOIBD/dca-template-config.json",
+  "logo_location":"dcc/VEOIBD/VEOIBD Logo.png",
+  "logo_link":"https://veoibd.org",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":true,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"upsert",
+  "submit_manifest_record_type":"file_only",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e72",
+  "sidebar_col":"#191920"
+}
diff --git a/demo/Logo_Sage_Logomark.png → dcc/demo/Logo_Sage_Logomark.png b/demo/Logo_Sage_Logomark.png → dcc/demo/Logo_Sage_Logomark.png
diff --git a/demo/dca-template-config.json → dcc/demo/dca-template-config.json b/demo/dca-template-config.json → dcc/demo/dca-template-config.json
diff --git a/dcc/demo/dca_demo_dca_config.json b/dcc/demo/dca_demo_dca_config.json
@@ -0,0 +1,21 @@
+{
+  "project_name":"DCA Demo",
+  "synapse_asset_view":"syn33715412",
+  "data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld",
+  "data_model_info": "",
+  "template_menu_config_file":"dcc/demo/dca-template-config.json",
+  "logo_location":"dcc/demo/Logo_Sage_Logomark.png",
+  "logo_link":"https://synapse.org",
+  "dcc_help_link": "",
+  "manifest_output_format":"google_sheet",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":true,
+  "submit_table_manipulation":"replace",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/demo/templates/Biospecimen.xlsx → dcc/demo/templates/Biospecimen.xlsx b/demo/templates/Biospecimen.xlsx → dcc/demo/templates/Biospecimen.xlsx
diff --git a/demo/templates/BulkRNA-seqAssay.xlsx → dcc/demo/templates/BulkRNA-seqAssay.xlsx b/demo/templates/BulkRNA-seqAssay.xlsx → dcc/demo/templates/BulkRNA-seqAssay.xlsx
diff --git a/demo/templates/Patient.xlsx → dcc/demo/templates/Patient.xlsx b/demo/templates/Patient.xlsx → dcc/demo/templates/Patient.xlsx
diff --git a/demo_upsert/dca-template-config.json → dcc/demo_upsert/dca-template-config.json b/demo_upsert/dca-template-config.json → dcc/demo_upsert/dca-template-config.json
diff --git a/dcc/demo_upsert/demo_upsert_dca_config.json b/dcc/demo_upsert/demo_upsert_dca_config.json
@@ -0,0 +1,17 @@
+{
+  "project_name":"DCA Demo Upsert",
+  "synapse_asset_view":"syn51489635",
+  "data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/schematic/develop/tests/data/example.model.jsonld",
+  "template_menu_config_file":"dcc/demo_upsert/dca-template-config.json",
+  "manifest_output_format":"excel",
+  "manifest_use_annotations":false,
+  "validate_restrict_rules":false,
+  "submit_use_schema_labels":false,
+  "submit_table_manipulation":"upsert",
+  "submit_manifest_record_type":"table_and_file",
+  "submit_hide_blanks":false,
+  "use_compliance_dashboard":false,
+  "primary_col":"#2a668d",
+  "secondary_col":"#184e71",
+  "sidebar_col":"#191919"
+}
diff --git a/demo_upsert/templates/Biospecimen.xlsx → dcc/demo_upsert/templates/Biospecimen.xlsx b/demo_upsert/templates/Biospecimen.xlsx → dcc/demo_upsert/templates/Biospecimen.xlsx
diff --git a/demo_upsert/templates/BulkRNA-seqAssay.xlsx → ...mo_upsert/templates/BulkRNA-seqAssay.xlsx b/demo_upsert/templates/BulkRNA-seqAssay.xlsx → ...mo_upsert/templates/BulkRNA-seqAssay.xlsx
diff --git a/demo_upsert/templates/Patient.xlsx → dcc/demo_upsert/templates/Patient.xlsx b/demo_upsert/templates/Patient.xlsx → dcc/demo_upsert/templates/Patient.xlsx
diff --git a/dcc_config.csv b/dcc_config.csv