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add the new openelis frontend aswell
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mherman22 committed May 24, 2024
1 parent 631f017 commit 056b5c6
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215 changes: 215 additions & 0 deletions configs/hapi/properties/hapi_application.yaml
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#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration
#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
management:
endpoints:
web:
exposure:
include: "health,prometheus"
spring:
main:
allow-circular-references: true
#allow-bean-definition-overriding: true
flyway:
enabled: false
check-location: false
baselineOnMigrate: true
datasource:
url: 'jdbc:postgresql://database:5432/clinlims?currentSchema=clinlims'
#url: jdbc:h2:mem:test_mem
username: clinlims
password: clinlims

driverClassName: org.postgresql.Driver
max-active: 15

# database connection pool size
hikari:
maximum-pool-size: 10
jpa:
properties:
hibernate.format_sql: false
hibernate.show_sql: false

#Hibernate dialect is automatically detected except Postgres and H2.
#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect
hibernate.dialect: org.hibernate.dialect.PostgreSQLDialect
hibernate.hbm2ddl.auto: update
# hibernate.jdbc.batch_size: 20
# hibernate.cache.use_query_cache: false
# hibernate.cache.use_second_level_cache: false
# hibernate.cache.use_structured_entries: false
# hibernate.cache.use_minimal_puts: false

### These settings will enable fulltext search with lucene or elastic
hibernate.search.enabled: true
### lucene parameters
# hibernate.search.backend.type: lucene
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
# hibernate.search.backend.directory.type: local-filesystem
# hibernate.search.backend.directory.root: target/lucenefiles
# hibernate.search.backend.lucene_version: lucene_current
### elastic parameters ===> see also elasticsearch section below <===
# hibernate.search.backend.type: elasticsearch
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
hapi:
fhir:

### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
openapi_enabled: true
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
fhir_version: R4
### This flag when enabled to true, will avail evaluate measure operations from CR Module.
### Flag is false by default, can be passed as command line argument to override.
cr_enabled: "${CR_ENABLED: false}"
### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
### to determine the FHIR server address
# use_apache_address_strategy: false
### forces the use of the https:// protocol for the returned server address.
### alternatively, it may be set using the X-Forwarded-Proto header.
# use_apache_address_strategy_https: false
### enables the server to host content like HTML, css, etc. under the url pattern of /static/**
### the deepest folder level will be used. E.g. - if you put file:/foo/bar/bazz as value then the files are resolved under /static/bazz/**
#staticLocation: file:/foo/bar/bazz
### enable to set the Server URL
server_address: https://fhir.openelis.org:8443/fhir/
# defer_indexing_for_codesystems_of_size: 101
# install_transitive_ig_dependencies: true
### tells the server whether to attempt to load IG resources that are already present
# reload_existing_implementationGuides : false
# implementationguides:
### example from registry (packages.fhir.org)
# swiss:
# name: swiss.mednet.fhir
# version: 0.8.0
# example not from registry
# ips_1_0_0:
# url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
# name: hl7.fhir.uv.ips
# version: 1.0.0
# supported_resource_types:
# - Patient
# - Observation
##################################################
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
##################################################
# allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
# allow_cascading_deletes: true
# allow_contains_searches: true
allow_external_references: true
# allow_multiple_delete: true
# allow_override_default_search_params: true
auto_create_placeholder_reference_targets: true
### tells the server to automatically append the current version of the target resource to references at these paths
# auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject
# cr_enabled: true
# ips_enabled: false
# default_encoding: JSON
default_pretty_print: false
default_page_size: 100
# delete_expunge_enabled: true
# enable_repository_validating_interceptor: true
# enable_index_missing_fields: false
# enable_index_of_type: true
# enable_index_contained_resource: false
### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
advanced_lucene_indexing: false
bulk_export_enabled: false
bulk_import_enabled: false
# enforce_referential_integrity_on_delete: false
# This is an experimental feature, and does not fully support _total and other FHIR features.
# enforce_referential_integrity_on_delete: false
# enforce_referential_integrity_on_write: false
# etag_support_enabled: true
# expunge_enabled: true
# client_id_strategy: ALPHANUMERIC
fhirpath_interceptor_enabled: false
# filter_search_enabled: true
# graphql_enabled: true
narrative_enabled: false
# mdm_enabled: true
# local_base_urls:
# - https://hapi.fhir.org/baseR4
mdm_enabled: false
# partitioning:
# allow_references_across_partitions: false
# partitioning_include_in_search_hashes: false
cors:
allow_Credentials: true
# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
allowed_origin:
- '*'

# Search coordinator thread pool sizes
search-coord-core-pool-size: 20
search-coord-max-pool-size: 100
search-coord-queue-capacity: 200

# comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans
#custom-bean-packages:

# comma-separated list of fully qualified interceptor classes.
# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages',
# or will be instantiated via reflection using an no-arg contructor; then registered with the server
#custom-interceptor-classes:

# Threadpool size for BATCH'ed GETs in a bundle.
# bundle_batch_pool_size: 10
# bundle_batch_pool_max_size: 50

# logger:
# error_format: 'ERROR - ${requestVerb} ${requestUrl}'
# format: >-
# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
# Operation[${operationType} ${operationName} ${idOrResourceName}]
# UA[${requestHeader.user-agent}] Params[${requestParameters}]
# ResponseEncoding[${responseEncodingNoDefault}]
# log_exceptions: true
# name: fhirtest.access
# max_binary_size: 104857600
max_page_size: 200
retain_cached_searches_mins: 60
reuse_cached_search_results_millis: 1
tester:
home:
name: OE adjacent FHIR Store
server_address: 'https://fhir.openelis.org:8443/fhir/'
refuse_to_fetch_third_party_urls: false
fhir_version: R4
# validation:
# requests_enabled: true
# responses_enabled: true
# binary_storage_enabled: true
inline_resource_storage_below_size: 4000
# bulk_export_enabled: true
subscription:
resthook_enabled: true
# websocket_enabled: false
# email:
# from: [email protected]
# host: google.com
# port:
# username:
# password:
# auth:
# startTlsEnable:
# startTlsRequired:
# quitWait:
# lastn_enabled: true
# store_resource_in_lucene_index_enabled: true
### This is configuration for normalized quantity search level default is 0
### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
# normalized_quantity_search_level: 2
#elasticsearch:
# debug:
# pretty_print_json_log: false
# refresh_after_write: false
# enabled: false
# password: SomePassword
# required_index_status: YELLOW
# rest_url: 'localhost:9200'
# protocol: 'http'
# schema_management_strategy: CREATE
39 changes: 39 additions & 0 deletions configs/nginx/nginx-prod.conf
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worker_processes 1;

events { worker_connections 1024; }
http {
server {
listen 80;
server_name _;
return 301 https://$host$request_uri;
}

server {
listen [::]:443 ssl;
listen 443 ssl default;
server_name __;

ssl_certificate /etc/nginx/certs/apache-selfsigned.crt;
ssl_certificate_key /etc/nginx/keys/apache-selfsigned.key;

proxy_set_header X-Forwarded-For $proxy_protocol_addr; # To forward the original client's IP address
proxy_set_header X-Forwarded-Proto $scheme; # to forward the original protocol (HTTP or HTTPS)
proxy_set_header Host $host; # to forward the original host requested by the client

absolute_redirect off;

location / {
proxy_pass http://frontend.openelis.org;
proxy_redirect off;
}

location /api/ {
proxy_pass https://oe.openelis.org:8443/api/;
proxy_redirect off;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Host $server_name;
}
}
}
51 changes: 51 additions & 0 deletions configs/nginx/nginx.conf
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worker_processes 1;

events { worker_connections 1024; }
http {
server {
listen 80;
server_name _;
return 301 https://$host$request_uri;
}

server {
listen [::]:443 ssl;
listen 443 ssl default;
server_name __;

ssl_certificate /etc/nginx/certs/apache-selfsigned.crt;
ssl_certificate_key /etc/nginx/keys/apache-selfsigned.key;

proxy_set_header X-Forwarded-For $proxy_protocol_addr; # To forward the original client's IP address
proxy_set_header X-Forwarded-Proto $scheme; # to forward the original protocol (HTTP or HTTPS)
proxy_set_header Host $host; # to forward the original host requested by the client

absolute_redirect off;

location / {
#Redirecting to the Front end on host machine
#On linux
#proxy_pass https://172.17.0.1:3000;
#On Mac
#proxy_pass https://host.docker.internal:3000;
#In docker
proxy_pass https://frontend.openelis.org:3000;
proxy_redirect off;
}

location /api/ {
#Redirecting to OpenELIS server on host machine
#On linux
#proxy_pass https://172.17.0.1:8443/api/;
#On Mac
#proxy_pass https://host.docker.internal:8443/api/;
#In docker
proxy_pass https://oe.openelis.org:8443/api/;
proxy_redirect off;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Host $server_name;
}
}
}
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