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add the new openelis frontend aswell
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#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration | ||
#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints | ||
management: | ||
endpoints: | ||
web: | ||
exposure: | ||
include: "health,prometheus" | ||
spring: | ||
main: | ||
allow-circular-references: true | ||
#allow-bean-definition-overriding: true | ||
flyway: | ||
enabled: false | ||
check-location: false | ||
baselineOnMigrate: true | ||
datasource: | ||
url: 'jdbc:postgresql://database:5432/clinlims?currentSchema=clinlims' | ||
#url: jdbc:h2:mem:test_mem | ||
username: clinlims | ||
password: clinlims | ||
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driverClassName: org.postgresql.Driver | ||
max-active: 15 | ||
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# database connection pool size | ||
hikari: | ||
maximum-pool-size: 10 | ||
jpa: | ||
properties: | ||
hibernate.format_sql: false | ||
hibernate.show_sql: false | ||
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#Hibernate dialect is automatically detected except Postgres and H2. | ||
#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect | ||
#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect | ||
hibernate.dialect: org.hibernate.dialect.PostgreSQLDialect | ||
hibernate.hbm2ddl.auto: update | ||
# hibernate.jdbc.batch_size: 20 | ||
# hibernate.cache.use_query_cache: false | ||
# hibernate.cache.use_second_level_cache: false | ||
# hibernate.cache.use_structured_entries: false | ||
# hibernate.cache.use_minimal_puts: false | ||
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### These settings will enable fulltext search with lucene or elastic | ||
hibernate.search.enabled: true | ||
### lucene parameters | ||
# hibernate.search.backend.type: lucene | ||
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer | ||
# hibernate.search.backend.directory.type: local-filesystem | ||
# hibernate.search.backend.directory.root: target/lucenefiles | ||
# hibernate.search.backend.lucene_version: lucene_current | ||
### elastic parameters ===> see also elasticsearch section below <=== | ||
# hibernate.search.backend.type: elasticsearch | ||
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer | ||
hapi: | ||
fhir: | ||
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### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html) | ||
openapi_enabled: true | ||
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5 | ||
fhir_version: R4 | ||
### This flag when enabled to true, will avail evaluate measure operations from CR Module. | ||
### Flag is false by default, can be passed as command line argument to override. | ||
cr_enabled: "${CR_ENABLED: false}" | ||
### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers | ||
### to determine the FHIR server address | ||
# use_apache_address_strategy: false | ||
### forces the use of the https:// protocol for the returned server address. | ||
### alternatively, it may be set using the X-Forwarded-Proto header. | ||
# use_apache_address_strategy_https: false | ||
### enables the server to host content like HTML, css, etc. under the url pattern of /static/** | ||
### the deepest folder level will be used. E.g. - if you put file:/foo/bar/bazz as value then the files are resolved under /static/bazz/** | ||
#staticLocation: file:/foo/bar/bazz | ||
### enable to set the Server URL | ||
server_address: https://fhir.openelis.org:8443/fhir/ | ||
# defer_indexing_for_codesystems_of_size: 101 | ||
# install_transitive_ig_dependencies: true | ||
### tells the server whether to attempt to load IG resources that are already present | ||
# reload_existing_implementationGuides : false | ||
# implementationguides: | ||
### example from registry (packages.fhir.org) | ||
# swiss: | ||
# name: swiss.mednet.fhir | ||
# version: 0.8.0 | ||
# example not from registry | ||
# ips_1_0_0: | ||
# url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz | ||
# name: hl7.fhir.uv.ips | ||
# version: 1.0.0 | ||
# supported_resource_types: | ||
# - Patient | ||
# - Observation | ||
################################################## | ||
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE) | ||
################################################## | ||
# allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET | ||
# allow_cascading_deletes: true | ||
# allow_contains_searches: true | ||
allow_external_references: true | ||
# allow_multiple_delete: true | ||
# allow_override_default_search_params: true | ||
auto_create_placeholder_reference_targets: true | ||
### tells the server to automatically append the current version of the target resource to references at these paths | ||
# auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject | ||
# cr_enabled: true | ||
# ips_enabled: false | ||
# default_encoding: JSON | ||
default_pretty_print: false | ||
default_page_size: 100 | ||
# delete_expunge_enabled: true | ||
# enable_repository_validating_interceptor: true | ||
# enable_index_missing_fields: false | ||
# enable_index_of_type: true | ||
# enable_index_contained_resource: false | ||
### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!! | ||
### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html | ||
advanced_lucene_indexing: false | ||
bulk_export_enabled: false | ||
bulk_import_enabled: false | ||
# enforce_referential_integrity_on_delete: false | ||
# This is an experimental feature, and does not fully support _total and other FHIR features. | ||
# enforce_referential_integrity_on_delete: false | ||
# enforce_referential_integrity_on_write: false | ||
# etag_support_enabled: true | ||
# expunge_enabled: true | ||
# client_id_strategy: ALPHANUMERIC | ||
fhirpath_interceptor_enabled: false | ||
# filter_search_enabled: true | ||
# graphql_enabled: true | ||
narrative_enabled: false | ||
# mdm_enabled: true | ||
# local_base_urls: | ||
# - https://hapi.fhir.org/baseR4 | ||
mdm_enabled: false | ||
# partitioning: | ||
# allow_references_across_partitions: false | ||
# partitioning_include_in_search_hashes: false | ||
cors: | ||
allow_Credentials: true | ||
# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List- | ||
allowed_origin: | ||
- '*' | ||
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# Search coordinator thread pool sizes | ||
search-coord-core-pool-size: 20 | ||
search-coord-max-pool-size: 100 | ||
search-coord-queue-capacity: 200 | ||
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# comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans | ||
#custom-bean-packages: | ||
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# comma-separated list of fully qualified interceptor classes. | ||
# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', | ||
# or will be instantiated via reflection using an no-arg contructor; then registered with the server | ||
#custom-interceptor-classes: | ||
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# Threadpool size for BATCH'ed GETs in a bundle. | ||
# bundle_batch_pool_size: 10 | ||
# bundle_batch_pool_max_size: 50 | ||
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# logger: | ||
# error_format: 'ERROR - ${requestVerb} ${requestUrl}' | ||
# format: >- | ||
# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] | ||
# Operation[${operationType} ${operationName} ${idOrResourceName}] | ||
# UA[${requestHeader.user-agent}] Params[${requestParameters}] | ||
# ResponseEncoding[${responseEncodingNoDefault}] | ||
# log_exceptions: true | ||
# name: fhirtest.access | ||
# max_binary_size: 104857600 | ||
max_page_size: 200 | ||
retain_cached_searches_mins: 60 | ||
reuse_cached_search_results_millis: 1 | ||
tester: | ||
home: | ||
name: OE adjacent FHIR Store | ||
server_address: 'https://fhir.openelis.org:8443/fhir/' | ||
refuse_to_fetch_third_party_urls: false | ||
fhir_version: R4 | ||
# validation: | ||
# requests_enabled: true | ||
# responses_enabled: true | ||
# binary_storage_enabled: true | ||
inline_resource_storage_below_size: 4000 | ||
# bulk_export_enabled: true | ||
subscription: | ||
resthook_enabled: true | ||
# websocket_enabled: false | ||
# email: | ||
# from: [email protected] | ||
# host: google.com | ||
# port: | ||
# username: | ||
# password: | ||
# auth: | ||
# startTlsEnable: | ||
# startTlsRequired: | ||
# quitWait: | ||
# lastn_enabled: true | ||
# store_resource_in_lucene_index_enabled: true | ||
### This is configuration for normalized quantity search level default is 0 | ||
### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default | ||
### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED | ||
### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED | ||
# normalized_quantity_search_level: 2 | ||
#elasticsearch: | ||
# debug: | ||
# pretty_print_json_log: false | ||
# refresh_after_write: false | ||
# enabled: false | ||
# password: SomePassword | ||
# required_index_status: YELLOW | ||
# rest_url: 'localhost:9200' | ||
# protocol: 'http' | ||
# schema_management_strategy: CREATE |
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worker_processes 1; | ||
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events { worker_connections 1024; } | ||
http { | ||
server { | ||
listen 80; | ||
server_name _; | ||
return 301 https://$host$request_uri; | ||
} | ||
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server { | ||
listen [::]:443 ssl; | ||
listen 443 ssl default; | ||
server_name __; | ||
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ssl_certificate /etc/nginx/certs/apache-selfsigned.crt; | ||
ssl_certificate_key /etc/nginx/keys/apache-selfsigned.key; | ||
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proxy_set_header X-Forwarded-For $proxy_protocol_addr; # To forward the original client's IP address | ||
proxy_set_header X-Forwarded-Proto $scheme; # to forward the original protocol (HTTP or HTTPS) | ||
proxy_set_header Host $host; # to forward the original host requested by the client | ||
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absolute_redirect off; | ||
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location / { | ||
proxy_pass http://frontend.openelis.org; | ||
proxy_redirect off; | ||
} | ||
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location /api/ { | ||
proxy_pass https://oe.openelis.org:8443/api/; | ||
proxy_redirect off; | ||
proxy_set_header Host $host; | ||
proxy_set_header X-Real-IP $remote_addr; | ||
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; | ||
proxy_set_header X-Forwarded-Host $server_name; | ||
} | ||
} | ||
} |
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worker_processes 1; | ||
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events { worker_connections 1024; } | ||
http { | ||
server { | ||
listen 80; | ||
server_name _; | ||
return 301 https://$host$request_uri; | ||
} | ||
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server { | ||
listen [::]:443 ssl; | ||
listen 443 ssl default; | ||
server_name __; | ||
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ssl_certificate /etc/nginx/certs/apache-selfsigned.crt; | ||
ssl_certificate_key /etc/nginx/keys/apache-selfsigned.key; | ||
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proxy_set_header X-Forwarded-For $proxy_protocol_addr; # To forward the original client's IP address | ||
proxy_set_header X-Forwarded-Proto $scheme; # to forward the original protocol (HTTP or HTTPS) | ||
proxy_set_header Host $host; # to forward the original host requested by the client | ||
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absolute_redirect off; | ||
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location / { | ||
#Redirecting to the Front end on host machine | ||
#On linux | ||
#proxy_pass https://172.17.0.1:3000; | ||
#On Mac | ||
#proxy_pass https://host.docker.internal:3000; | ||
#In docker | ||
proxy_pass https://frontend.openelis.org:3000; | ||
proxy_redirect off; | ||
} | ||
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location /api/ { | ||
#Redirecting to OpenELIS server on host machine | ||
#On linux | ||
#proxy_pass https://172.17.0.1:8443/api/; | ||
#On Mac | ||
#proxy_pass https://host.docker.internal:8443/api/; | ||
#In docker | ||
proxy_pass https://oe.openelis.org:8443/api/; | ||
proxy_redirect off; | ||
proxy_set_header Host $host; | ||
proxy_set_header X-Real-IP $remote_addr; | ||
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; | ||
proxy_set_header X-Forwarded-Host $server_name; | ||
} | ||
} | ||
} |
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