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Nottingham SBRC

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  1. gsmodutils gsmodutils Public

    A utility framework for the management of genome-scale metabolic models.

    TeX 11 2

  2. cluster_query_tool cluster_query_tool Public

    Cluster query tool

    Jupyter Notebook 6

  3. CnecatorGSM CnecatorGSM Public

    Supplementary code and files for the manuscript "A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnolog…

    HTML 3 2

  4. clau_supp clau_supp Public

    Supplementary Repository for gsmodutils

    Jupyter Notebook

  5. Impact-of-Physicochemical-Parameters-on-thermodynamics-based-FBA Impact-of-Physicochemical-Parameters-on-thermodynamics-based-FBA Public

    This repository contains the Matlab files used for the calculations presented in "Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth…

  6. C_auto_essentiality C_auto_essentiality Public

    Files for "Required gene set for autotrophic growth of Clostridium autoethanogenum"

    MATLAB

Repositories

Showing 6 of 6 repositories
  • CnecatorGSM Public

    Supplementary code and files for the manuscript "A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications"

    SBRCNottingham/CnecatorGSM’s past year of commit activity
    HTML 3 2 0 0 Updated May 23, 2022
  • C_auto_essentiality Public

    Files for "Required gene set for autotrophic growth of Clostridium autoethanogenum"

    SBRCNottingham/C_auto_essentiality’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Dec 13, 2021
  • Impact-of-Physicochemical-Parameters-on-thermodynamics-based-FBA Public

    This repository contains the Matlab files used for the calculations presented in "Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions" by Tomi-Andrino et al. 2020

    SBRCNottingham/Impact-of-Physicochemical-Parameters-on-thermodynamics-based-FBA’s past year of commit activity
    0 0 0 0 Updated Oct 8, 2020
  • gsmodutils Public

    A utility framework for the management of genome-scale metabolic models.

    SBRCNottingham/gsmodutils’s past year of commit activity
    TeX 11 Apache-2.0 2 8 1 Updated Mar 28, 2020
  • clau_supp Public

    Supplementary Repository for gsmodutils

    SBRCNottingham/clau_supp’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 27, 2019
  • cluster_query_tool Public

    Cluster query tool

    SBRCNottingham/cluster_query_tool’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 0 0 0 Updated Jun 28, 2018

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