Merge pull request #57 from RTIInternational/human-readable-r-func_do…

…cumentation-update

Added stuff so I could put links to topmed docs

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/atherosclerosis.md

@@ -12,7 +12,7 @@
 <a id="cac_score_1"></a>
 ## atherosclerosis: **cac_score_1** (cac_score)
   Coronary artery calcification (CAC) score using Agatston scoring of CT scan(s) of coronary arteries
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [CHS](#cac_score_1-chs)
     * [JHS](#cac_score_1-jhs)
   * **Metadata**:
@@ -105,7 +105,7 @@
 <a id="cac_volume_1"></a>
 ## atherosclerosis: **cac_volume_1** (cac_volume)
   Coronary artery calcium volume using CT scan(s) of coronary arteries
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#cac_volume_1-fhs)
   * **Metadata**:
     **`Data Type`**: decimal, **`Measurement Units`**: cubic millimeters, **`Version`**: 1, **`Has Age Variable`**: Yes, **`Date Harmonized`**: 2017-10-30 17:31:30
@@ -164,7 +164,7 @@
 <a id="carotid_plaque_1"></a>
 ## atherosclerosis: **carotid_plaque_1** (carotid_plaque)
   Presence or absence of carotid plaque.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#carotid_plaque_1-aric)
     * [CHS](#carotid_plaque_1-chs)
     * [JHS](#carotid_plaque_1-jhs)
@@ -367,7 +367,7 @@
 <a id="carotid_stenosis_1"></a>
 ## atherosclerosis: **carotid_stenosis_1** (carotid_stenosis)
   Extent of narrowing of the carotid artery.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [CHS](#carotid_stenosis_1-chs)
     * [FHS](#carotid_stenosis_1-fhs)
     * [MESA](#carotid_stenosis_1-mesa)
@@ -562,7 +562,7 @@
 <a id="cimt_1"></a>
 ## atherosclerosis: **cimt_1** (cimt)
   Common carotid intima-media thickness, calculated as the mean of two values: mean of multiple thickness estimates from the left far wall and from the right far wall.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#cimt_1-aric)
     * [CHS](#cimt_1-chs)
     * [FHS](#cimt_1-fhs)
@@ -750,7 +750,7 @@
 <a id="cimt_2"></a>
 ## atherosclerosis: **cimt_2** (cimt)
   Common carotid intima-media thickness, calculated as the mean of four values: maximum of multiple thickness estimates from the left far wall, left near wall, right far wall, and right near wall.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#cimt_2-aric)
     * [CHS](#cimt_2-chs)
     * [FHS](#cimt_2-fhs)

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/atherosclerosis_events_incident.md

@@ -14,7 +14,7 @@
 <a id="angina_incident_1"></a>
 ## atherosclerosis_events_incident: **angina_incident_1** (angina_incident)
   An indicator of whether a subject had an angina event (that was verified by adjudication or by medical professionals) during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#angina_incident_1-fhs)
     * [WHI](#angina_incident_1-whi)
   * **Metadata**:
@@ -159,7 +159,7 @@
 <a id="cabg_incident_1"></a>
 ## atherosclerosis_events_incident: **cabg_incident_1** (cabg_incident)
   An indicator of whether a subject had a coronary artery bypass graft (CABG) procedure (that was verified by adjudication or by medical professionals) during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#cabg_incident_1-fhs)
     * [WHI](#cabg_incident_1-whi)
   * **Metadata**:
@@ -294,7 +294,7 @@
 <a id="cad_followup_start_age_1"></a>
 ## atherosclerosis_events_incident: **cad_followup_start_age_1** (cad_followup_start_age)
   Age of subject at the start of the follow-up period during which atherosclerosis events were reviewed and adjudicated.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#cad_followup_start_age_1-fhs)
     * [WHI](#cad_followup_start_age_1-whi)
   * **Metadata**:
@@ -345,7 +345,7 @@
 <a id="chd_death_definite_1"></a>
 ## atherosclerosis_events_incident: **chd_death_definite_1** (chd_death_definite)
   An indicator of whether the cause of death was determined by medical professionals or technicians to be "definite" coronary heart disease for subjects who died during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#chd_death_definite_1-fhs)
     * [WHI](#chd_death_definite_1-whi)
   * **Metadata**:
@@ -499,7 +499,7 @@
 <a id="chd_death_probable_1"></a>
 ## atherosclerosis_events_incident: **chd_death_probable_1** (chd_death_probable)
   An indicator of whether the cause of death was determined by medical professionals or technicians to be "probable" or "definite" coronary heart disease for subjects who died during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#chd_death_probable_1-fhs)
     * [WHI](#chd_death_probable_1-whi)
   * **Metadata**:
@@ -654,7 +654,7 @@
 <a id="coronary_angioplasty_incident_1"></a>
 ## atherosclerosis_events_incident: **coronary_angioplasty_incident_1** (coronary_angioplasty_incident)
   An indicator of whether a subject had a coronary angioplasty procedure (that was verified by adjudication or by medical professionals) during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [WHI](#coronary_angioplasty_incident_1-whi)
   * **Metadata**:
     **`Data Type`**: encoded, **`Measurement Units`**: None, **`Version`**: 1, **`Has Age Variable`**: Yes, **`Date Harmonized`**: 2019-10-31 16:34:10
@@ -698,7 +698,7 @@
 <a id="mi_incident_1"></a>
 ## atherosclerosis_events_incident: **mi_incident_1** (mi_incident)
   An indicator of whether a subject had a myocardial infarction (MI) event (that was verified by adjudication or by medical professionals) during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#mi_incident_1-fhs)
     * [WHI](#mi_incident_1-whi)
   * **Metadata**:
@@ -841,7 +841,7 @@
 <a id="pad_incident_1"></a>
 ## atherosclerosis_events_incident: **pad_incident_1** (pad_incident)
   An indicator of whether a subject had peripheral arterial disease (that was verified by adjudication or by medical professionals) during the follow-up period.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [FHS](#pad_incident_1-fhs)
     * [WHI](#pad_incident_1-whi)
   * **Metadata**:

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/atherosclerosis_events_prior.md

@@ -12,7 +12,7 @@
 <a id="angina_prior_1"></a>
 ## atherosclerosis_events_prior: **angina_prior_1** (angina_prior)
   An indicator of whether a subject had an angina event prior to the baseline visit.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [CHS](#angina_prior_1-chs)
     * [COPDGene](#angina_prior_1-copdgene)
     * [FHS](#angina_prior_1-fhs)
@@ -216,7 +216,7 @@
 <a id="cabg_prior_1"></a>
 ## atherosclerosis_events_prior: **cabg_prior_1** (cabg_prior)
   An indicator of whether a subject had a coronary artery bypass graft (CABG) procedure prior to the start of the baseline visit.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#cabg_prior_1-aric)
     * [CHS](#cabg_prior_1-chs)
     * [COPDGene](#cabg_prior_1-copdgene)
@@ -499,7 +499,7 @@
 <a id="coronary_angioplasty_prior_1"></a>
 ## atherosclerosis_events_prior: **coronary_angioplasty_prior_1** (coronary_angioplasty_prior)
   An indicator of whether a subject had a coronary angioplasty procedure prior to the start of the baseline visit.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#coronary_angioplasty_prior_1-aric)
     * [CHS](#coronary_angioplasty_prior_1-chs)
     * [COPDGene](#coronary_angioplasty_prior_1-copdgene)
@@ -688,7 +688,7 @@
 <a id="coronary_revascularization_prior_1"></a>
 ## atherosclerosis_events_prior: **coronary_revascularization_prior_1** (coronary_revascularization_prior)
   An indicator of whether a subject had a coronary revascularization procedure prior to the start of the baseline visit. This includes angioplasty, CABG, and other coronary revascularization procedures.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
   * **Metadata**:
     **`Data Type`**: encoded, **`Measurement Units`**: coronary_revascularization_prior, **`Version`**: 1, **`Has Age Variable`**: Yes, **`Date Harmonized`**: 2019-10-31 16:32:57
   * **Controlled Vocabulary**:
@@ -709,7 +709,7 @@
 <a id="mi_prior_1"></a>
 ## atherosclerosis_events_prior: **mi_prior_1** (mi_prior)
   An indicator of whether a subject had a myocardial infarction (MI) prior to the start of the baseline visit.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#mi_prior_1-aric)
     * [CHS](#mi_prior_1-chs)
     * [COPDGene](#mi_prior_1-copdgene)
@@ -970,7 +970,7 @@
 <a id="pad_prior_1"></a>
 ## atherosclerosis_events_prior: **pad_prior_1** (pad_prior)
   An indicator of whether a subject had peripheral arterial disease prior to the baseline visit.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#pad_prior_1-aric)
     * [CHS](#pad_prior_1-chs)
     * [COPDGene](#pad_prior_1-copdgene)

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/baseline_common_covariates.md

@@ -11,7 +11,7 @@
 <a id="bmi_baseline_1"></a>
 ## baseline_common_covariates: **bmi_baseline_1** (bmi_baseline)
   Body mass index calculated at baseline.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
   * **Metadata**:
     **`Data Type`**: decimal, **`Measurement Units`**: kg/m^2, **`Version`**: 4, **`Has Age Variable`**: Yes, **`Date Harmonized`**: 2019-09-30 16:03:59
   * **Controlled Vocabulary**:
@@ -82,7 +82,7 @@
 <a id="current_smoker_baseline_1"></a>
 ## baseline_common_covariates: **current_smoker_baseline_1** (current_smoker_baseline)
   Indicates whether subject currently smokes cigarettes.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#current_smoker_baseline_1-aric)
     * [CARDIA](#current_smoker_baseline_1-cardia)
     * [CHS](#current_smoker_baseline_1-chs)
@@ -408,7 +408,7 @@
 <a id="ever_smoker_baseline_1"></a>
 ## baseline_common_covariates: **ever_smoker_baseline_1** (ever_smoker_baseline)
   Indicates whether subject ever regularly smoked cigarettes.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#ever_smoker_baseline_1-aric)
     * [CARDIA](#ever_smoker_baseline_1-cardia)
     * [CHS](#ever_smoker_baseline_1-chs)
@@ -786,7 +786,7 @@
 <a id="height_baseline_1"></a>
 ## baseline_common_covariates: **height_baseline_1** (height_baseline)
   Body height at baseline.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#height_baseline_1-aric)
     * [CARDIA](#height_baseline_1-cardia)
     * [CHS](#height_baseline_1-chs)
@@ -1052,7 +1052,7 @@
 <a id="weight_baseline_1"></a>
 ## baseline_common_covariates: **weight_baseline_1** (weight_baseline)
   Body weight at baseline.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#weight_baseline_1-aric)
     * [CARDIA](#weight_baseline_1-cardia)
     * [CHS](#weight_baseline_1-chs)

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/blood_cell_count.md

@@ -21,7 +21,7 @@
 <a id="basophil_ncnc_bld_1"></a>
 ## blood_cell_count: **basophil_ncnc_bld_1** (basophil_ncnc_bld)
   Count by volume, or number concentration (ncnc), of basophils in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#basophil_ncnc_bld_1-aric)
     * [CARDIA](#basophil_ncnc_bld_1-cardia)
     * [HCHS_SOL](#basophil_ncnc_bld_1-hchs_sol)
@@ -259,7 +259,7 @@
 <a id="eosinophil_ncnc_bld_1"></a>
 ## blood_cell_count: **eosinophil_ncnc_bld_1** (eosinophil_ncnc_bld)
   Count by volume, or number concentration (ncnc), of eosinophils in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#eosinophil_ncnc_bld_1-aric)
     * [CARDIA](#eosinophil_ncnc_bld_1-cardia)
     * [HCHS_SOL](#eosinophil_ncnc_bld_1-hchs_sol)
@@ -497,7 +497,7 @@
 <a id="hematocrit_vfr_bld_1"></a>
 ## blood_cell_count: **hematocrit_vfr_bld_1** (hematocrit_vfr_bld)
   Measurement of hematocrit, the fraction of volume (vfr) of blood (bld) that is composed of red blood cells.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#hematocrit_vfr_bld_1-aric)
     * [CARDIA](#hematocrit_vfr_bld_1-cardia)
     * [CHS](#hematocrit_vfr_bld_1-chs)
@@ -781,7 +781,7 @@
 <a id="hemoglobin_mcnc_bld_1"></a>
 ## blood_cell_count: **hemoglobin_mcnc_bld_1** (hemoglobin_mcnc_bld)
   Measurement of mass per volume, or mass concentration (mcnc), of hemoglobin in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#hemoglobin_mcnc_bld_1-aric)
     * [CARDIA](#hemoglobin_mcnc_bld_1-cardia)
     * [CHS](#hemoglobin_mcnc_bld_1-chs)
@@ -1063,7 +1063,7 @@
 <a id="lymphocyte_ncnc_bld_1"></a>
 ## blood_cell_count: **lymphocyte_ncnc_bld_1** (lymphocyte_ncnc_bld)
   Count by volume, or number concentration (ncnc), of lymphocytes in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#lymphocyte_ncnc_bld_1-aric)
     * [CARDIA](#lymphocyte_ncnc_bld_1-cardia)
     * [HCHS_SOL](#lymphocyte_ncnc_bld_1-hchs_sol)
@@ -1312,7 +1312,7 @@
 <a id="mch_entmass_rbc_1"></a>
 ## blood_cell_count: **mch_entmass_rbc_1** (mch_entmass_rbc)
   Measurement of the average mass (entmass) of hemoglobin per red blood cell(rbc), known as mean corpuscular hemoglobin (MCH).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#mch_entmass_rbc_1-aric)
     * [CARDIA](#mch_entmass_rbc_1-cardia)
     * [HCHS_SOL](#mch_entmass_rbc_1-hchs_sol)
@@ -1541,7 +1541,7 @@
 <a id="mchc_mcnc_rbc_1"></a>
 ## blood_cell_count: **mchc_mcnc_rbc_1** (mchc_mcnc_rbc)
   Measurement of the mass concentration (mcnc) of hemoglobin in a given volume of packed red blood cells (rbc), known as mean corpuscular hemoglobin concentration (MCHC).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#mchc_mcnc_rbc_1-aric)
     * [CARDIA](#mchc_mcnc_rbc_1-cardia)
     * [CHS](#mchc_mcnc_rbc_1-chs)
@@ -1829,7 +1829,7 @@
 <a id="mcv_entvol_rbc_1"></a>
 ## blood_cell_count: **mcv_entvol_rbc_1** (mcv_entvol_rbc)
   Measurement of the average volume (entvol) of red blood cells (rbc), known as mean corpuscular volume (MCV).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#mcv_entvol_rbc_1-aric)
     * [CARDIA](#mcv_entvol_rbc_1-cardia)
     * [HCHS_SOL](#mcv_entvol_rbc_1-hchs_sol)
@@ -2067,7 +2067,7 @@
 <a id="monocyte_ncnc_bld_1"></a>
 ## blood_cell_count: **monocyte_ncnc_bld_1** (monocyte_ncnc_bld)
   Count by volume, or number concentration (ncnc), of monocytes in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#monocyte_ncnc_bld_1-aric)
     * [CARDIA](#monocyte_ncnc_bld_1-cardia)
     * [HCHS_SOL](#monocyte_ncnc_bld_1-hchs_sol)
@@ -2315,7 +2315,7 @@
 <a id="neutrophil_ncnc_bld_1"></a>
 ## blood_cell_count: **neutrophil_ncnc_bld_1** (neutrophil_ncnc_bld)
   Count by volume, or number concentration (ncnc), of neutrophils in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#neutrophil_ncnc_bld_1-aric)
     * [CARDIA](#neutrophil_ncnc_bld_1-cardia)
     * [HCHS_SOL](#neutrophil_ncnc_bld_1-hchs_sol)
@@ -2591,7 +2591,7 @@
 <a id="platelet_ncnc_bld_1"></a>
 ## blood_cell_count: **platelet_ncnc_bld_1** (platelet_ncnc_bld)
   Count by volume, or number concentration (ncnc), of platelets in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#platelet_ncnc_bld_1-aric)
     * [CARDIA](#platelet_ncnc_bld_1-cardia)
     * [CHS](#platelet_ncnc_bld_1-chs)
@@ -2872,7 +2872,7 @@
 <a id="pmv_entvol_bld_1"></a>
 ## blood_cell_count: **pmv_entvol_bld_1** (pmv_entvol_bld)
   Measurement of the mean volume (entvol) of platelets in the blood (bld), known as mean platelet volume (MPV or PMV).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#pmv_entvol_bld_1-aric)
     * [JHS](#pmv_entvol_bld_1-jhs)
   * **Metadata**:
@@ -2951,7 +2951,7 @@
 <a id="rbc_ncnc_bld_1"></a>
 ## blood_cell_count: **rbc_ncnc_bld_1** (rbc_ncnc_bld)
   Count by volume, or number concentration (ncnc), of red blood cells in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#rbc_ncnc_bld_1-aric)
     * [CARDIA](#rbc_ncnc_bld_1-cardia)
     * [HCHS_SOL](#rbc_ncnc_bld_1-hchs_sol)
@@ -3157,7 +3157,7 @@
 <a id="rdw_ratio_rbc_1"></a>
 ## blood_cell_count: **rdw_ratio_rbc_1** (rdw_ratio_rbc)
   Measurement of the ratio of variation in width to the mean width of the red blood cell (rbc) volume distribution curve taken at +/- 1 CV, known as red cell distribution width (RDW).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#rdw_ratio_rbc_1-aric)
     * [HCHS_SOL](#rdw_ratio_rbc_1-hchs_sol)
     * [JHS](#rdw_ratio_rbc_1-jhs)
@@ -3304,7 +3304,7 @@
 <a id="wbc_ncnc_bld_1"></a>
 ## blood_cell_count: **wbc_ncnc_bld_1** (wbc_ncnc_bld)
   Count by volume, or number concentration (ncnc), of white blood cells in the blood (bld).
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#wbc_ncnc_bld_1-aric)
     * [CARDIA](#wbc_ncnc_bld_1-cardia)
     * [CHS](#wbc_ncnc_bld_1-chs)

resources/human-readable-harmonized-variable-documentation/generated-doc-pages/blood_pressure.md

@@ -9,7 +9,7 @@
 <a id="antihypertensive_meds_1"></a>
 ## blood_pressure: **antihypertensive_meds_1** (antihypertensive_meds)
   Indicator for use of antihypertensive medication at the time of blood pressure measurement.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#antihypertensive_meds_1-aric)
     * [CARDIA](#antihypertensive_meds_1-cardia)
     * [CHS](#antihypertensive_meds_1-chs)
@@ -374,7 +374,7 @@
 <a id="bp_diastolic_1"></a>
 ## blood_pressure: **bp_diastolic_1** (bp_diastolic)
   Resting diastolic blood pressure from the upper arm in a clinical setting.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#bp_diastolic_1-aric)
     * [CARDIA](#bp_diastolic_1-cardia)
     * [CHS](#bp_diastolic_1-chs)
@@ -822,7 +822,7 @@
 <a id="bp_systolic_1"></a>
 ## blood_pressure: **bp_systolic_1** (bp_systolic)
   Resting systolic blood pressure from the upper arm in a clinical setting.
-  * **Harmonization Units**:
+  * **Study (harmonization_units)**:
     * [ARIC](#bp_systolic_1-aric)
     * [CARDIA](#bp_systolic_1-cardia)
     * [CHS](#bp_systolic_1-chs)