Code

Network-based interactions#24

Code

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ptheywood merged 29 commits intomainRSE-Sheffield/exatepp-abm:mainfrom initial-network-interactionsRSE-Sheffield/exatepp-abm:initial-network-interactionsCopy head branch name to clipboardDec 11, 2024

+3,012-232

Commits

Commits on Nov 29, 2024

• Bugfix: Set the phase duration for initially infected individuals so they are not permanently infected

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• Add initial household networks generation and interaction

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• WIP: initial home/network split, reference model doesn't behave as expected, need to dig more/ rething things

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• Implement per individual file and demo plotting script

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• Switch to GCC 8 compatible inclusive_scan

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• fixup: port another std::inclusive_scan

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• Implement GCC 8 compatible std::recduce(first, last, init)

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• Tests: tests for GCC 8 compatible reduce

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• Refactor GCC 8 compatible inclusive_scan methods to be more like C++17 stdlib

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• fixup lint

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• Visualisation: Group agents by household, reduce impact on non-vis builds

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• Performance: Switch to bucket messaging to improve performance

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• Tests: expand util testing

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• Add missing struct members to cli::print

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• wip: refactoring

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• Refactor: Move per-agent visualisation variable initialisation to visualisation.h/cu

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• Refactor: Change how household/populations are generated and add tests

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• Fixup: fixup vis build after refactor

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• Readme: remove rogue backtick

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• Readme: Markdown fix

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• Wip: random network

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Commits on Dec 2, 2024

• Fix initial id-based pair-wise random interactions

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• Tests: Fix std::TestPopulation.generateHouseholdStructures for older gcc

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Commits on Dec 3, 2024

• Random Interactions: Initiial fully functional random daily interactions

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Commits on Dec 4, 2024

• sample data file fixup - accidentally commeted error triggering entry

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Commits on Dec 5, 2024

• Random interaction workaround based on flamegpu version

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Commits on Dec 10, 2024

• Fixup: Remove debuguing exit statement realted to flamegpu bug

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• Small world network implementation. WIP commit prior to FLAMEGPU_INIT_FUNC refactor

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Commits on Dec 11, 2024

• Refactoring, small world networks & workarounds

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