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save scp object as rds instead of RData
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KristinaGomoryova committed Jan 13, 2025
1 parent 230a1bb commit 5b0e66e
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion tools/scp/macros.xml
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Expand Up @@ -232,7 +232,7 @@

<section name="data_export" title="Export data" expanded="true">
<param name="export_tables" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Export intermediate results" help="Whether only the final result table (log2 transformed, normalized, imputed, batch-corrected data) should be exported or all intermediate results."/>
<param name="export_RData" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Export scp object as RData" help="Whether to export the scp object as RData."/>
<param name="export_RData" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Export scp object as .rds" help="Whether to export the scp object as rds file format."/>
<param name="export_R_script" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Export the R script to reproduce the analysis"
help="Check this box to export the script executed in the Galaxy tool as an R file to be able to reproduce the same processing offline. Not that in this case, the file paths need to be altered and all the dependencies have to be managed manually."/>
</section>
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2 changes: 1 addition & 1 deletion tools/scp/scp_workflow.xml
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Expand Up @@ -413,7 +413,7 @@
<discover_datasets pattern="__name_and_ext__" directory="outputs" />
<filter>data_export['export_tables']</filter>
</collection>
<data name="scp_object" format="RData" label="scp object as RData">
<data name="scp_object" format="rds" label="scp object as .rds">
<filter>data_export['export_RData']</filter>
</data>
<data name="script" format="txt" label="R script">
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