Merge branch 'development'

DESCRIPTION

@@ -19,8 +19,8 @@ SystemRequirements: 'unrar' (Linux/macOS) or '7-Zip' (Windows) to work with '.ra
 URL: 
     https://reproducible.predictiveecology.org,
     https://github.com/PredictiveEcology/reproducible
-Date: 2023-07-30
-Version: 2.0.6
+Date: 2023-08-07
+Version: 2.0.7
 Authors@R: 
     c(person(given = "Eliot J B",
              family = "McIntire",

NEWS.md

@@ -1,10 +1,11 @@
-# reproducible 2.0.6
+# reproducible 2.0.7
 
 ## Enhancements
 * Address change in `round` with `R > 4.3.1`; now a primitive, that does method dispatch. Failure was identified with unit tests, by Luke Tierney who was making the change in `base::round`.
 
 ## Bug fixes
 * several identified and fixed (PRs by Ceres Barros, notably, PRs #341, #342, #343). These fix missing argument in a `.unwrap` call, and missing check in `preProcess`, when `targetFilePath` was `NULL`.
+* minor documentation updates
 
 # reproducible 2.0.5
 

R/download.R

@@ -401,7 +401,6 @@ dlGoogle <- function(url, archive = NULL, targetFile = NULL,
 #' Download file from generic source url
 #'
 #' @param url  The url (link) to the file.
-#' @param needChecksums Logical indicating whether to generate checksums. ## TODO: add overwrite arg to the function?
 #'
 #' @author Eliot McIntire and Alex Chubaty
 #' @keywords internal
@@ -441,6 +440,8 @@ dlGeneric <- function(url, destinationPath, verbose = getOption("reproducible.ve
 }
 
 #' @inheritParams prepInputs
+#' @param needChecksums Logical indicating whether to generate checksums. ## TODO: add overwrite arg to the function?
+#'
 downloadRemote <- function(url, archive, targetFile, checkSums, dlFun = NULL,
                            fileToDownload, messSkipDownload,
                            destinationPath, overwrite, needChecksums, .tempPath,

R/postProcess.R

@@ -147,6 +147,7 @@ postProcess.default <- function(x, ...) {
 #' @return A GIS file (e.g., RasterLayer, SpatRaster etc.) that has been
 #' appropriately cropped.
 #' @rdname deprecated
+#' @name deprecated
 cropInputs <- function(x, studyArea, rasterToMatch, verbose = getOption("reproducible.verbose", 1), ...) {
   UseMethod("cropInputs")
 }
@@ -224,11 +225,6 @@ fixErrors.default <- function(x, objectName, attemptErrorFixes = TRUE,
 #'                      resolution and projection of `x`.
 #'                      See details in [postProcessTo()].
 #'
-#' @param cores An `integer*` or `'AUTO'`. This will be used if `gdalwarp` is
-#'              triggered. `'AUTO'*` will calculate 90% of the total
-#'              number of cores in the system, while an integer or rounded
-#'              float will be passed as the exact number of cores to be used.
-#'
 #' @return A file of the same type as starting, but with projection (and possibly
 #' other characteristics, including resolution, origin, extent if changed).
 #'
@@ -426,8 +422,6 @@ determineFilename <- function(filename2 = NULL, filename1 = NULL,
 #'
 #' @param overwrite Logical. Should file being written overwrite an existing file if it exists.
 #'
-#' @param filename2 File name passed to [writeTo()].
-#'
 #' @param ... Passed into [writeTo()]
 #'
 #' @inheritParams prepInputs

cran-comments.md

@@ -1,6 +1,6 @@
 ## Release information
 
-This is a minor update that accommodates changes in R-devel that are causing a failure in testing of this package. Several other minor enhancements and bugfixes are alson included as outlined in the News.
+This is a minor update that accommodates changes in R-devel that are causing a failure in testing of this package. Several other minor enhancements and bugfixes are also included as outlined in the News, including small documentation updates.
 
 See `NEWS.md` for a full list of changes.