Add missing test vcf

PlantandFoodResearch · Mar 14, 2024 · 31246dd · 31246dd
1 parent c30aba8
commit 31246dd
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/mchap/tests/test_io/data/simple.vcf b/mchap/tests/test_io/data/simple.vcf
@@ -0,0 +1,20 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##fileDate=20201009
+##source=.
+##reference=./simple.fasta
+##contig=<ID=CHR1,length=60>
+##contig=<ID=CHR2,length=60>
+##contig=<ID=CHR3,length=60>
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE1	SAMPLE2	SAMPLE3
+CHR1	2	.	A	T	60	PASS	NS=3;AC=1	GT	0|0|1|1	0|0|1|1	0|0|0|1
+CHR1	7	.	A	C	60	PASS	NS=3;AC=1	GT	0|0|1|0	0|0|0|0	0|0|0|1
+CHR1	16	.	A	G	60	PASS	NS=3;AC=1	GT	0|0|1|1	0|0|1|1	0|0|0|1
+CHR1	23	.	A	C,T	60	PASS	NS=3;AC=2	GT	0|0|1|2	0|0|2|2	0|0|0|1
+CHR2	2	.	A	T	60	PASS	NS=3;AC=1	GT	0|0|1|1	0|0|2|2	0|0|0|1
+CHR2	15	.	A	T	60	PASS	NS=3;AC=1	GT	0|0|0|1	0|0|0|1	0|0|0|0
+CHR2	20	.	A	C	60	PASS	NS=3;AC=1	GT	.|.|.|.	.|.|.|.	.|.|.|.
+CHR2	20	.	A	G,T	60	PASS	NS=3;AC=2	GT	0|0|0|2	0|0|1|2	0|1|1|1