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fix(data): update CPIC data
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markwoon committed Jun 12, 2023
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9 changes: 7 additions & 2 deletions docs/Genes-and-Drugs.md
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Expand Up @@ -40,8 +40,13 @@ The `Named Allele Matcher` will search the given sample file for locations assoc

These genes will not get allele matches from PharmCAT<sup>*</sup>. However, you can use an outside caller like
[Stargazer](https://stargazer.gs.washington.edu/stargazerweb/index.html) or
[StellarPGx](https://github.com/SBIMB/StellarPGx) to get _CYP2D6_ diplotype calls, or [Optitype](https://github.com/FRED-2/OptiType) to get _HLA_ calls, and then supply that to PharmCAT for use in
matching recommendation data. See [Outside Call Format](/using/Outside-Call-Format) for formatting details and [Calling-CYP2D6.md](/using/Calling-CYP2D6.md) or [Calling-HLA.md](/using/Calling-HLA.md) for how to obtain _CYP2D6_ or _HLA_ calls, respectively, using sequencing data.
[StellarPGx](https://github.com/SBIMB/StellarPGx) to get CYP2D6 diplotype calls, or
[Optitype](https://github.com/FRED-2/OptiType) to get HLA calls, and then supply that to PharmCAT for use in
matching recommendation data.

See [Outside Call Format](/using/Outside-Call-Format) for formatting details and
[Calling-CYP2D6.md](/using/Calling-CYP2D6.md) or [Calling-HLA.md](/using/Calling-HLA.md) for how to obtain CYP2D6 or
HLA calls, respectively, using sequencing data.

| Gene | CPIC | PharmGKB-DPWG |
| :--- | :---: | :---: |
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2 changes: 1 addition & 1 deletion docs/Phenotypes-List.md
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Expand Up @@ -138,7 +138,7 @@ If you are using [outside calls](/using/Outside-Call-Format), you can see how we
<th style="text-align: left">Named Alleles</th>
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<td style="vertical-align: top"><ul style="padding-left: 1rem"><li>*1</li><li>*2</li><li>*3</li><li>*4</li><li>*5</li><li>*6</li><li>*7</li></ul></td>
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4 changes: 2 additions & 2 deletions docs/examples/pharmcat.example.match.html

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