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Releases: PathwayCommons/grounding-search

Version 0.5.0

17 Jun 15:39
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  • Support for prebuilt data dumps on Zenodo.
  • Add data dump & restore actions to the npm scripts.
  • Improved support for sars-cov.
  • Add support for mapping database IDs.
  • Enable file size sanity checking for production data refreshes.
  • Make improvements to the documentation.

Version 0.4.0

01 Jun 19:17
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  • Make Uniprot data updated in refresh operations by default.
  • Search queries allow for specifying namespace as an array of allowed namespaces to search. Previously, only a single namespace was allowed.
  • Set the default to namespace = ['ncbi', 'chebi'] so that other namespaces can be indexed but not included in searches by default (e.g. Uniprot).
  • Fix: Check for gene names before adding to synonym list.
  • Fix: Add sanity check re. downloads in case of error from database provider servers.
  • Fix: omitList incorrectly applied in certain XML parsing cases.

Version 0.3.0

21 Aug 17:50
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  • Major changes
    • SARS-CoV-2 support
    • Attributes for MIRIAM registered prefixes
  • Minor changes
    • ChEBI summary
    • bug fixes