system interrogation for mpi/etc

PHAREHUB · Nov 13, 2023 · 04bd673 · 04bd673
1 parent cffbb1e
commit 04bd673
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Showing 58 changed files with 271 additions and 51 deletions.
diff --git a/lgtm.yml b/lgtm.yml
diff --git a/src/amr/data/field/coarsening/default_field_coarsener.hpp b/src/amr/data/field/coarsening/default_field_coarsener.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_DEFAULT_FIELD_COARSENER_HPP
 #define PHARE_DEFAULT_FIELD_COARSENER_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include "core/def.hpp"
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/utilities/constants.hpp"

diff --git a/src/amr/data/field/coarsening/field_coarsen_index_weight.hpp b/src/amr/data/field/coarsening/field_coarsen_index_weight.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_FIELD_COARSEN_HPP
 #define PHARE_FIELD_COARSEN_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include "core/def.hpp"
 #include "coarsen_weighter.hpp"
 #include "core/data/grid/gridlayoutdefs.hpp"

diff --git a/src/amr/data/field/coarsening/field_coarsen_operator.hpp b/src/amr/data/field/coarsening/field_coarsen_operator.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_FIELD_DATA_COARSEN_HPP
 #define PHARE_FIELD_DATA_COARSEN_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include "amr/data/field/field_data.hpp"
 #include "amr/data/field/field_geometry.hpp"
 #include "default_field_coarsener.hpp"

diff --git a/src/amr/data/field/coarsening/magnetic_field_coarsener.hpp b/src/amr/data/field/coarsening/magnetic_field_coarsener.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_MAGNETIC_FIELD_COARSENER
 #define PHARE_MAGNETIC_FIELD_COARSENER
 
+
+#include "core/def/mpi.hpp"
+
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/hybrid/hybrid_quantities.hpp"
 #include "core/utilities/constants.hpp"

diff --git a/src/amr/data/field/field_data.hpp b/src/amr/data/field/field_data.hpp
@@ -2,6 +2,9 @@
 #define PHARE_SRC_AMR_FIELD_FIELD_DATA_HPP
 
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/PatchData.h>
 #include <SAMRAI/tbox/MemoryUtilities.h>
 #include <utility>
@@ -72,9 +75,9 @@ namespace amr
         {
         }
 
-        FieldData()                 = delete;
-        FieldData(FieldData const&) = delete;
-        FieldData(FieldData&&)      = default;
+        FieldData()                            = delete;
+        FieldData(FieldData const&)            = delete;
+        FieldData(FieldData&&)                 = default;
         FieldData& operator=(FieldData const&) = delete;
 
 

diff --git a/src/amr/data/field/field_data_factory.hpp b/src/amr/data/field/field_data_factory.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_SRC_AMR_FIELD_FIELD_DATA_FACTORY_HPP
 #define PHARE_SRC_AMR_FIELD_FIELD_DATA_FACTORY_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/geom/CartesianPatchGeometry.h>
 #include <SAMRAI/hier/Patch.h>
 #include <SAMRAI/hier/PatchDataFactory.h>

diff --git a/src/amr/data/field/field_geometry.hpp b/src/amr/data/field/field_geometry.hpp
@@ -4,6 +4,9 @@
 #include <cassert>
 #include <iostream>
 
+#include "core/def/mpi.hpp"
+
+
 #include "SAMRAI/hier/IntVector.h"
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/data/grid/gridlayout.hpp"

diff --git a/src/amr/data/field/field_overlap.hpp b/src/amr/data/field/field_overlap.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_SRC_AMR_FIELD_FIELD_OVERLAP_HPP
 #define PHARE_SRC_AMR_FIELD_FIELD_OVERLAP_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/BoxContainer.h>
 #include <SAMRAI/hier/BoxOverlap.h>
 #include <SAMRAI/hier/Transformation.h>

diff --git a/src/amr/data/field/field_variable.hpp b/src/amr/data/field/field_variable.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_SRC_AMR_FIELD_FIELD_VARIABLE_HPP
 #define PHARE_SRC_AMR_FIELD_FIELD_VARIABLE_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Variable.h>
 
 #include <utility>

diff --git a/src/amr/data/field/field_variable_fill_pattern.hpp b/src/amr/data/field/field_variable_fill_pattern.hpp
@@ -3,6 +3,8 @@
 
 #include <cassert>
 
+#include "core/def/mpi.hpp"
+
 #include "SAMRAI/xfer/VariableFillPattern.h"
 
 #include "core/utilities/types.hpp"
@@ -110,7 +112,10 @@ class FieldFillPattern : public SAMRAI::xfer::VariableFillPattern
                                              transformation);
     }
 
-    std::string const& getPatternName() const { return s_name_id; }
+    std::string const& getPatternName() const
+    {
+        return s_name_id;
+    }
 
 private:
     FieldFillPattern(FieldFillPattern const&)            = delete;

diff --git a/src/amr/data/field/refine/electric_field_refiner.hpp b/src/amr/data/field/refine/electric_field_refiner.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_ELECTRIC_FIELD_REFINER_HPP
 #define PHARE_ELECTRIC_FIELD_REFINER_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Box.h>
 
 #include "amr/resources_manager/amr_utils.hpp"

diff --git a/src/amr/data/field/refine/field_linear_refine.hpp b/src/amr/data/field/refine/field_linear_refine.hpp
@@ -2,6 +2,9 @@
 #define PHARE_FIELD_LINEAR_REFINE_HPP
 
 
+#include "core/def/mpi.hpp"
+
+
 #include "core/def.hpp"
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/data/field/field.hpp"

diff --git a/src/amr/data/field/refine/field_refine_operator.hpp b/src/amr/data/field/refine/field_refine_operator.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_FIELD_REFINE_OPERATOR_HPP
 #define PHARE_FIELD_REFINE_OPERATOR_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include "core/def.hpp"
 #include "amr/data/field/field_data.hpp"
 #include "amr/data/field/field_geometry.hpp"

diff --git a/src/amr/data/field/refine/field_refiner.hpp b/src/amr/data/field/refine/field_refiner.hpp
@@ -2,6 +2,9 @@
 #define PHARE_FIELD_REFINER_HPP
 
 
+#include "core/def/mpi.hpp"
+
+
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/data/field/field.hpp"
 #include "field_linear_refine.hpp"

diff --git a/src/amr/data/field/refine/linear_weighter.hpp b/src/amr/data/field/refine/linear_weighter.hpp
@@ -2,6 +2,9 @@
 #define PHARE_LINEAR_WEIGHTER_HPP
 
 
+#include "core/def/mpi.hpp"
+
+
 #include "core/def.hpp"
 #include "core/data/grid/gridlayoutdefs.hpp"
 #include "core/data/field/field.hpp"

diff --git a/src/amr/data/field/refine/magnetic_field_refiner.hpp b/src/amr/data/field/refine/magnetic_field_refiner.hpp
@@ -1,6 +1,9 @@
 #ifndef PHARE_MAGNETIC_FIELD_REFINER_HPP
 #define PHARE_MAGNETIC_FIELD_REFINER_HPP
 
+
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Box.h>
 
 #include "amr/resources_manager/amr_utils.hpp"

diff --git a/src/amr/data/field/time_interpolate/field_linear_time_interpolate.hpp b/src/amr/data/field/time_interpolate/field_linear_time_interpolate.hpp
@@ -9,6 +9,9 @@
 #include "amr/data/field/field_data.hpp"
 #include "amr/data/field/field_geometry.hpp"
 
+#include "core/def/mpi.hpp"
+
+
 #include <SAMRAI/hier/TimeInterpolateOperator.h>
 
 

diff --git a/src/amr/data/particles/particles_data.hpp b/src/amr/data/particles/particles_data.hpp
@@ -7,6 +7,9 @@
 #include <stdexcept>
 #include <vector>
 
+#include "core/def/mpi.hpp"
+
+
 #include <SAMRAI/hier/BoxOverlap.h>
 #include <SAMRAI/hier/IntVector.h>
 #include <SAMRAI/hier/PatchData.h>

diff --git a/src/amr/data/particles/particles_data_factory.hpp b/src/amr/data/particles/particles_data_factory.hpp
@@ -3,6 +3,8 @@
 
 #include "particles_data.hpp"
 
+#include "core/def/mpi.hpp"
+
 
 #include <SAMRAI/hier/BoxGeometry.h>
 #include <SAMRAI/hier/Patch.h>

diff --git a/src/amr/data/particles/particles_variable.hpp b/src/amr/data/particles/particles_variable.hpp
@@ -3,6 +3,8 @@
 
 #include "core/data/grid/gridlayout.hpp" // particle ghost width
 #include "particles_data_factory.hpp"
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Variable.h>
 #include <SAMRAI/tbox/Dimension.h>
 

diff --git a/src/amr/data/particles/refine/particles_data_split.hpp b/src/amr/data/particles/refine/particles_data_split.hpp
@@ -2,6 +2,8 @@
 #define PHARE_PARTICLES_DATA_SPLIT_HPP
 
 
+#include "core/def/mpi.hpp"
+
 #include "core/def.hpp"
 #include "amr/data/particles/particles_data.hpp"
 #include "amr/resources_manager/amr_utils.hpp"

diff --git a/src/amr/messengers/communicator.hpp b/src/amr/messengers/communicator.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_QUANTITY_REFINER_HPP
 #define PHARE_QUANTITY_REFINER_HPP
 
+#include "core/def/mpi.hpp"
+
 
 #include <SAMRAI/tbox/Dimension.h>
 #include <SAMRAI/xfer/CoarsenAlgorithm.h>

diff --git a/src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp b/src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_HYBRID_HYBRID_MESSENGER_STRATEGY_HPP
 #define PHARE_HYBRID_HYBRID_MESSENGER_STRATEGY_HPP
 
+#include "core/def/mpi.hpp"
+
 #include "SAMRAI/hier/CoarseFineBoundary.h"
 #include "SAMRAI/hier/IntVector.h"
 #include "refiner_pool.hpp"

diff --git a/src/amr/messengers/hybrid_messenger_strategy.hpp b/src/amr/messengers/hybrid_messenger_strategy.hpp
@@ -3,6 +3,8 @@
 
 #include "amr/messengers/messenger_info.hpp"
 
+#include "core/def/mpi.hpp"
+
 
 #include <SAMRAI/hier/PatchHierarchy.h>
 #include <SAMRAI/hier/PatchLevel.h>

diff --git a/src/amr/messengers/messenger.hpp b/src/amr/messengers/messenger.hpp
@@ -4,6 +4,8 @@
 
 #include <string>
 
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Patch.h>
 #include <SAMRAI/hier/PatchHierarchy.h>
 

diff --git a/src/amr/messengers/mhd_messenger.hpp b/src/amr/messengers/mhd_messenger.hpp
@@ -4,6 +4,8 @@
 
 #include <memory>
 #include <string>
+#include "core/def/mpi.hpp"
+
 
 #include <SAMRAI/hier/CoarsenOperator.h>
 #include <SAMRAI/hier/PatchLevel.h>

diff --git a/src/amr/multiphysics_integrator.hpp b/src/amr/multiphysics_integrator.hpp
@@ -10,6 +10,8 @@
 #include <unordered_map>
 
 
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/algs/TimeRefinementLevelStrategy.h>
 #include <SAMRAI/mesh/StandardTagAndInitStrategy.h>
 

diff --git a/src/amr/physical_models/mhd_model.hpp b/src/amr/physical_models/mhd_model.hpp
@@ -3,6 +3,8 @@
 
 #include <string>
 
+#include "core/def/mpi.hpp"
+
 
 #include <SAMRAI/hier/PatchLevel.h>
 

diff --git a/src/amr/resources_manager/amr_utils.hpp b/src/amr/resources_manager/amr_utils.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_AMR_UTILS_HPP
 #define PHARE_AMR_UTILS_HPP
 
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/geom/CartesianPatchGeometry.h>
 #include <SAMRAI/hier/Box.h>
 #include <SAMRAI/hier/BoxOverlap.h>

diff --git a/src/amr/resources_manager/resources_guards.hpp b/src/amr/resources_manager/resources_guards.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_AMR_TOOLS_RESOURCES_GUARDS_HPP
 #define PHARE_AMR_TOOLS_RESOURCES_GUARDS_HPP
 
+#include "core/def/mpi.hpp"
+
 #include "resources_manager_utilities.hpp"
 
 #include <memory>
@@ -64,11 +66,11 @@ namespace amr
 
 
         // We just need the move constructor for using ResourceManager::createResourcesGuards
-        ResourcesGuard(ResourcesGuard&&)      = default;
-        ResourcesGuard()                      = delete;
-        ResourcesGuard(ResourcesGuard const&) = delete;
+        ResourcesGuard(ResourcesGuard&&)                        = default;
+        ResourcesGuard()                                        = delete;
+        ResourcesGuard(ResourcesGuard const&)                   = delete;
         ResourcesGuard& operator=(ResourcesGuard const& source) = delete;
-        ResourcesGuard& operator=(ResourcesGuard&&) = delete;
+        ResourcesGuard& operator=(ResourcesGuard&&)             = delete;
 
 
 

diff --git a/src/amr/resources_manager/resources_manager.hpp b/src/amr/resources_manager/resources_manager.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_AMR_TOOLS_RESOURCES_MANAGER_HPP
 #define PHARE_AMR_TOOLS_RESOURCES_MANAGER_HPP
 
+#include "core/def/mpi.hpp"
+
 #include "core/logger.hpp"
 
 #include "field_resource.hpp"

diff --git a/src/amr/solvers/solver.hpp b/src/amr/solvers/solver.hpp
@@ -2,6 +2,7 @@
 #define PHARE_SOLVER_HPP
 
 #include <string>
+#include "core/def/mpi.hpp"
 
 #include <SAMRAI/hier/PatchHierarchy.h>
 #include <SAMRAI/hier/PatchLevel.h>
@@ -80,8 +81,7 @@ namespace solver
          * ResourcesManager of the given model, onto the given Patch, at the given time.
          */
         virtual void allocate(IPhysicalModel<AMR_Types>& model, SAMRAI::hier::Patch& patch,
-                              double const allocateTime) const
-            = 0;
+                              double const allocateTime) const = 0;
 
 
 

diff --git a/src/amr/solvers/solver_ppc.hpp b/src/amr/solvers/solver_ppc.hpp
@@ -1,6 +1,8 @@
 #ifndef PHARE_SOLVER_PPC_HPP
 #define PHARE_SOLVER_PPC_HPP
 
+#include "core/def/mpi.hpp"
+
 #include <SAMRAI/hier/Patch.h>
Original file line number	Diff line number	Diff line change
Expand Up		@@ -3,6 +3,8 @@

		#include <string>

		#include "core/def/mpi.hpp"


		#include <SAMRAI/hier/PatchLevel.h>

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