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Link Snakemake to otoole config file #205

Merged
merged 3 commits into from
Oct 6, 2024
Merged

Link Snakemake to otoole config file #205

merged 3 commits into from
Oct 6, 2024

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trevorb1
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@trevorb1 trevorb1 commented Oct 6, 2024

Description

In this PR I have:

  • Implemented snakemake reading in the otoole config file to determine what files need to be generated
  • Removed the empty CSV files we used to template missing data. Instead the indicies are pulled from the otoole config file
  • Rewritten the create_missing_csv.py module to use the otoole config file

No logic was implemented that changes results. Rather, this PR just reduces the amount of data we are duplicating by referencing all expected data against the otoole config file.

Note: This PR can not create empty set definitions, only parameter definitions. This is the same functionality as before.

Issue Ticket Number

Closes #194

Documentation

na

@trevorb1 trevorb1 merged commit 822f272 into master Oct 6, 2024
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@trevorb1 trevorb1 deleted the issue-194 branch November 26, 2024 01:57
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[FEATURE]: Get expected otoole data/result files from the config file
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