Update requirements file

docs/requirements.txt

@@ -15,10 +15,10 @@ scipy
 dash
 geos
 cartopy
+pandas>=2.0
 
 # docs
 sphinx
 myst-parser
 pydata-sphinx-theme>=0.8.1
-sphinx-book-theme
 docutils==0.17.1

setup.cfg

@@ -12,16 +12,10 @@ license = APGL-3.0
 license_files = LICENSE.txt
 long_description = file: README.md
 long_description_content_type = text/x-rst; charset=UTF-8
-url = https://github.com/pyscaffold/pyscaffold/
+url = https://github.com/OSeMOSYS/osemosys_global
 # Add here related links, for example:
 project_urls =
-    Documentation = https://pyscaffold.org/
-#    Source = https://github.com/pyscaffold/pyscaffold/
-#    Changelog = https://pyscaffold.org/en/latest/changelog.html
-#    Tracker = https://github.com/pyscaffold/pyscaffold/issues
-#    Conda-Forge = https://anaconda.org/conda-forge/pyscaffold
-#    Download = https://pypi.org/project/PyScaffold/#files
-#    Twitter = https://twitter.com/PyScaffold
+    Documentation = https://osemosys-global.readthedocs.io
 
 # Change if running only on Windows, Mac or Linux (comma-separated)
 platforms = any
@@ -49,27 +43,20 @@ python_requires = >=3.9
 # For more information, check out https://semver.org/.
 install_requires =
     importlib-metadata; python_version<"3.8"
-    #sphinx>=3.2.1
-    Sphinx==4.2.0
-    furo
+    # package
+    pandas>=2.0
     matplotlib
     seaborn
     geopandas
     urllib3
     PyYAML
-    geos
     cartopy
     pytest
     world-bank-data
     scikit-learn
     otoole>=1.1.0
-    sphinx-book-theme
-    myst-parser
-    otoole>=1.1.0
     scipy
     dash
-    pydata-sphinx-theme>=0.8.1
-    docutils>=0.17.1
 
 [options.packages.find]
 where = workflow/scripts

workflow/envs/osemosys-global.yaml

@@ -1,25 +1,27 @@
 name: osemosys-global
 
 channels:
+ - defaults
  - bioconda
  - conda-forge
 
 dependencies:
- - python>=3.8
- - pip
+ - python>=3.9
+ - pip>=24.0
 
- - pandas
- - urllib3
- - matplotlib
- - seaborn
- - snakemake-minimal
- - pytest
- - scikit-learn
- - cartopy
+ - pandas==2.0.3 # otoole req. Relax to 2.2 in upcoming release
+ - urllib3>=2.2
+ - matplotlib>=3.8
+ - seaborn>=0.13
+ - snakemake-minimal>=7.32
+ - pytest>=8.2
+ - scikit-learn>=1.4
+ - cartopy>=0.23
+ - geopandas>=0.14
+ - plotly>=5.22
 
  - pip:
-   - world-bank-data
-   - otoole>=1.1.0
-   - dash
-   - geos
-   - git+https://github.com/OSeMOSYS/osemosys_global@master
+   - world-bank-data>=0.1.3
+   - otoole==1.1.2
+   - dash==2.17
+   - ../../. # path to setup.py