varchar limit altered

.github/workflows/R_CMD_check_Hades.yaml

@@ -7,6 +7,7 @@ on:
       - 'main'
   pull_request:
     branches:
+      - "*"
       - 'main'
 
 name: R-CMD-check

R/ConceptIds.R

@@ -142,6 +142,7 @@ exportConceptInformation <- function(connection = NULL,
           table = vocabularyTable,
           snakeCaseToCamelCase = TRUE
         )
+
       if (nrow(data) > 0) {
         data <- makeDataExportable(
           x = data,

inst/settings/resultsDataModelSpecification.csv

@@ -91,7 +91,7 @@ concept,concept_name,varchar(255),Yes,No,No,Yes,No,Yes,No
 concept,domain_id,varchar(20),Yes,No,No,Yes,No,Yes,No
 concept,vocabulary_id,varchar(50),Yes,No,No,Yes,No,Yes,No
 concept,concept_class_id,varchar(20),Yes,No,No,Yes,No,Yes,No
-concept,standard_concept,varchar(1),No,No,No,Yes,No,Yes,No
+concept,standard_concept,varchar,No,No,No,Yes,No,Yes,No
 concept,concept_code,varchar(255),Yes,No,No,Yes,No,Yes,No
 concept,valid_start_date,Date,Yes,No,No,Yes,No,Yes,No
 concept,valid_end_date,Date,Yes,No,No,Yes,No,Yes,No
@@ -105,7 +105,7 @@ concept_relationship,concept_id_2,bigint,Yes,Yes,No,Yes,No,Yes,No
 concept_relationship,relationship_id,varchar(20),Yes,Yes,No,Yes,No,Yes,No
 concept_relationship,valid_start_date,Date,Yes,No,No,Yes,No,Yes,No
 concept_relationship,valid_end_date,Date,Yes,No,No,Yes,No,Yes,No
-concept_relationship,invalid_reason,varchar(1),No,No,No,Yes,No,Yes,No
+concept_relationship,invalid_reason,varchar,No,No,No,Yes,No,Yes,No
 concept_sets,cohort_id,bigint,Yes,Yes,No,Yes,No,No,No
 concept_sets,concept_set_id,int,Yes,Yes,No,Yes,No,No,No
 concept_sets,concept_set_sql,varchar,Yes,No,No,Yes,No,No,No
@@ -117,7 +117,7 @@ concept_synonym,language_concept_id,bigint,Yes,Yes,No,Yes,No,Yes,No
 database,database_id,varchar,Yes,Yes,No,Yes,No,No,No
 database,database_name,varchar,No,No,No,Yes,No,No,No
 database,description,varchar,No,No,No,Yes,No,No,No
-database,is_meta_analysis,varchar(1),Yes,No,No,Yes,No,No,No
+database,is_meta_analysis,varchar,Yes,No,No,Yes,No,No,No
 database,vocabulary_version,varchar,No,No,Yes,Yes,No,No,No
 database,vocabulary_version_cdm,varchar,No,No,Yes,Yes,No,No,No
 domain,domain_id,varchar(20),Yes,Yes,No,Yes,No,Yes,Yes
@@ -157,8 +157,8 @@ orphan_concept,concept_count,float,Yes,No,No,Yes,Yes,No,No
 orphan_concept,concept_subjects,float,Yes,No,No,Yes,Yes,No,No
 relationship,relationship_id,varchar(20),Yes,Yes,No,Yes,No,Yes,Yes
 relationship,relationship_name,varchar(255),Yes,No,No,Yes,No,Yes,Yes
-relationship,is_hierarchical,varchar(1),Yes,No,No,Yes,No,Yes,Yes
-relationship,defines_ancestry,varchar(1),Yes,No,No,Yes,No,Yes,Yes
+relationship,is_hierarchical,varchar,Yes,No,No,Yes,No,Yes,Yes
+relationship,defines_ancestry,varchar,Yes,No,No,Yes,No,Yes,Yes
 relationship,reverse_relationship_id,varchar(20),Yes,Yes,No,Yes,No,Yes,Yes
 relationship,relationship_concept_id,bigint,Yes,Yes,No,Yes,No,Yes,Yes
 resolved_concepts,cohort_id,bigint,Yes,Yes,No,Yes,No,No,No
@@ -168,8 +168,8 @@ resolved_concepts,database_id,varchar,Yes,Yes,No,Yes,No,No,No
 temporal_analysis_ref,analysis_id,int,Yes,Yes,No,Yes,No,No,No
 temporal_analysis_ref,analysis_name,varchar,Yes,No,No,Yes,No,No,No
 temporal_analysis_ref,domain_id,varchar(20),Yes,Yes,No,Yes,No,No,No
-temporal_analysis_ref,is_binary,varchar(1),Yes,No,No,Yes,No,No,No
-temporal_analysis_ref,missing_means_zero,varchar(1),No,No,No,Yes,No,No,No
+temporal_analysis_ref,is_binary,varchar,Yes,No,No,Yes,No,No,No
+temporal_analysis_ref,missing_means_zero,varchar,No,No,No,Yes,No,No,No
 temporal_covariate_ref,covariate_id,bigint,Yes,Yes,No,Yes,No,No,No
 temporal_covariate_ref,covariate_name,varchar,Yes,No,No,Yes,No,No,No
 temporal_covariate_ref,analysis_id,int,Yes,No,No,Yes,No,No,No

inst/sql/sql_server/CreateResultsDataModel.sql

@@ -210,7 +210,7 @@ CREATE TABLE @results_schema.@concept (
 			domain_id VARCHAR(20) NOT NULL,
 			vocabulary_id VARCHAR NOT NULL,
 			concept_class_id VARCHAR(20) NOT NULL,
-			standard_concept VARCHAR(1),
+			standard_concept varchar,
 			concept_code VARCHAR NOT NULL,
 			valid_start_date DATE NOT NULL,
 			valid_end_date DATE NOT NULL,
@@ -236,7 +236,7 @@ CREATE TABLE @results_schema.@concept_relationship (
 			relationship_id VARCHAR(20) NOT NULL,
 			valid_start_date DATE NOT NULL,
 			valid_end_date DATE NOT NULL,
-			invalid_reason VARCHAR(1),
+			invalid_reason varchar,
 			PRIMARY KEY(concept_id_1, concept_id_2, relationship_id)
 );
 
@@ -266,7 +266,7 @@ CREATE TABLE @results_schema.@database (
 			database_id VARCHAR NOT NULL,
 			database_name VARCHAR,
 			description VARCHAR,
-			is_meta_analysis VARCHAR(1) NOT NULL,
+			is_meta_analysis varchar NOT NULL,
 			vocabulary_version VARCHAR,
 			vocabulary_version_cdm VARCHAR,
 			PRIMARY KEY(database_id)
@@ -361,8 +361,8 @@ CREATE TABLE @results_schema.@orphan_concept (
 CREATE TABLE @results_schema.@relationship (
 			relationship_id VARCHAR(20) NOT NULL,
 			relationship_name VARCHAR(255) NOT NULL,
-			is_hierarchical VARCHAR(1) NOT NULL,
-			defines_ancestry VARCHAR(1) NOT NULL,
+			is_hierarchical varchar NOT NULL,
+			defines_ancestry varchar NOT NULL,
 			reverse_relationship_id VARCHAR(20) NOT NULL,
 			relationship_concept_id BIGINT NOT NULL,
 			PRIMARY KEY(relationship_id, reverse_relationship_id, relationship_concept_id)
@@ -384,8 +384,8 @@ CREATE TABLE @results_schema.@temporal_analysis_ref (
 			analysis_id INT NOT NULL,
 			analysis_name VARCHAR NOT NULL,
 			domain_id VARCHAR(20) NOT NULL,
-			is_binary VARCHAR(1) NOT NULL,
-			missing_means_zero VARCHAR(1),
+			is_binary varchar NOT NULL,
+			missing_means_zero varchar,
 			PRIMARY KEY(analysis_id, domain_id)
 );