ScriptCollections

calculateNx.py 脚本计算基因组 N0 - N100 指标，泛基因组分析的论文里通常会有一个图展示多个基因组的Nx值

python calculateNx.py 18.final.genome/D17.fa.masked > output.txt

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
20240524_01.py		20240524_01.py
20240524_02.py		20240524_02.py
README.md		README.md
ROUSFinder2.py		ROUSFinder2.py
adjustVCFsampleOrder.py		adjustVCFsampleOrder.py
calculateNx.py		calculateNx.py
comb_coverage01.py		comb_coverage01.py
condense_and_summarise_fastas.R		condense_and_summarise_fastas.R
convertVcfTo012Matrix.py		convertVcfTo012Matrix.py
getImputeSites.py		getImputeSites.py
getLongestTranscriptID.R		getLongestTranscriptID.R
get_mapped_paired_end_reads_from_bam.py		get_mapped_paired_end_reads_from_bam.py
get_species_placement_in_NCBI.py		get_species_placement_in_NCBI.py
randomSelectRowsFromVCF.py		randomSelectRowsFromVCF.py
randomvcf2NA.py		randomvcf2NA.py
run_matrixEqtl.R		run_matrixEqtl.R
vcf2fasta.sjf.py		vcf2fasta.sjf.py

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