config_vars.py

# Config file

cellranger_path = "/scratch/groups/hheyn/software/cellranger/6.1.1/cellranger"

human = "/scratch/groups/hheyn/data/reference/refdata-gex-GRCh38-2020-A/"
mouse = "/scratch/groups/hheyn/data/reference/refdata-gex-mm10-2020-A/"
pig = "/scratch/groups/hheyn/data/reference/reference_sus_scrofa/Sus.scrofa_genome"
combined_human_mouse="/scratch/groups/hheyn/data/reference/refdata-gex-GRCh38-and-mm10-2020-A/"
vdj_reference_path = "/scratch/groups/hheyn/data/reference/refdata-cellranger-vdj-GRCm38-alts-ensembl-4.0.0/"

reference_path = human

project_path = "/scratch/devel/wblevins/SUBPROJECTS/SCGTEST_43"

SUBPROJECTS = ["SCGTEST_43"]