Merge pull request #460 from ModECI/testv

To v0.4.6 and regenerated/tested with latest neuromllite
ModECI · May 29, 2023 · 82770ce · 82770ce
2 parents a17bb42 + ef47b41
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diff --git a/docs/sphinx/source/api/export_format/NeuroML/ABCD.1.mdf.png b/docs/sphinx/source/api/export_format/NeuroML/ABCD.1.mdf.png
diff --git a/docs/sphinx/source/api/export_format/NeuroML/ABCD.mdf.png b/docs/sphinx/source/api/export_format/NeuroML/ABCD.mdf.png
diff --git a/docs/sphinx/source/api/export_format/NeuroML/FN.gv.png b/docs/sphinx/source/api/export_format/NeuroML/FN.gv.png
diff --git a/docs/sphinx/source/api/export_format/NeuroML/FNmulti.png b/docs/sphinx/source/api/export_format/NeuroML/FNmulti.png
diff --git a/docs/sphinx/source/api/export_format/NeuroML/Izh.png b/docs/sphinx/source/api/export_format/NeuroML/Izh.png
diff --git a/docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png b/docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
diff --git a/examples/ACT-R/addition.json b/examples/ACT-R/addition.json
@@ -1,7 +1,7 @@
 {
     "addition": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "addition_graph": {
                 "nodes": {

diff --git a/examples/ACT-R/addition.yaml b/examples/ACT-R/addition.yaml
@@ -1,6 +1,6 @@
 addition:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         addition_graph:
             nodes:

diff --git a/examples/ACT-R/count.json b/examples/ACT-R/count.json
@@ -1,7 +1,7 @@
 {
     "count": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "count_graph": {
                 "nodes": {

diff --git a/examples/ACT-R/count.yaml b/examples/ACT-R/count.yaml
@@ -1,6 +1,6 @@
 count:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         count_graph:
             nodes:

diff --git a/examples/MDF/ABCD.json b/examples/MDF/ABCD.json
@@ -1,7 +1,7 @@
 {
     "ABCD": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "abcd_example": {
                 "nodes": {

diff --git a/examples/MDF/ABCD.yaml b/examples/MDF/ABCD.yaml
@@ -1,6 +1,6 @@
 ABCD:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         abcd_example:
             nodes:

diff --git a/examples/MDF/Arrays.json b/examples/MDF/Arrays.json
@@ -1,7 +1,7 @@
 {
     "Arrays": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "array_example": {
                 "nodes": {

diff --git a/examples/MDF/Arrays.yaml b/examples/MDF/Arrays.yaml
@@ -1,6 +1,6 @@
 Arrays:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         array_example:
             nodes:

diff --git a/examples/MDF/ParametersFunctions.json b/examples/MDF/ParametersFunctions.json
@@ -1,7 +1,7 @@
 {
     "ParametersFunctions": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "params_funcs_example": {
                 "nodes": {

diff --git a/examples/MDF/ParametersFunctions.yaml b/examples/MDF/ParametersFunctions.yaml
@@ -1,6 +1,6 @@
 ParametersFunctions:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         params_funcs_example:
             nodes:

diff --git a/examples/MDF/RNN/IAF_net.json b/examples/MDF/RNN/IAF_net.json
@@ -1,7 +1,7 @@
 {
     "IAF_net": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "iaf_example": {
                 "nodes": {

diff --git a/examples/MDF/RNN/IAF_net.yaml b/examples/MDF/RNN/IAF_net.yaml
@@ -1,6 +1,6 @@
 IAF_net:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         iaf_example:
             nodes:

diff --git a/examples/MDF/RNN/IAF_net2.json b/examples/MDF/RNN/IAF_net2.json
@@ -1,7 +1,7 @@
 {
     "IAF_net2": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "iaf_example": {
                 "nodes": {

diff --git a/examples/MDF/RNN/IAF_net2.yaml b/examples/MDF/RNN/IAF_net2.yaml
@@ -1,6 +1,6 @@
 IAF_net2:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         iaf_example:
             nodes:

diff --git a/examples/MDF/RNN/IAFs.json b/examples/MDF/RNN/IAFs.json
@@ -1,7 +1,7 @@
 {
     "IAFs": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "iaf_example": {
                 "nodes": {

diff --git a/examples/MDF/RNN/IAFs.yaml b/examples/MDF/RNN/IAFs.yaml
@@ -1,6 +1,6 @@
 IAFs:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         iaf_example:
             nodes:

diff --git a/examples/MDF/RNN/RNNs.json b/examples/MDF/RNN/RNNs.json
@@ -1,7 +1,7 @@
 {
     "RNNs": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "rnn_example": {
                 "nodes": {

diff --git a/examples/MDF/RNN/RNNs.yaml b/examples/MDF/RNN/RNNs.yaml
@@ -1,6 +1,6 @@
 RNNs:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         rnn_example:
             nodes:

diff --git a/examples/MDF/Simple.bson b/examples/MDF/Simple.bson
diff --git a/examples/MDF/Simple.json b/examples/MDF/Simple.json
@@ -1,7 +1,7 @@
 {
     "Simple": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "simple_example": {
                 "nodes": {

diff --git a/examples/MDF/Simple.yaml b/examples/MDF/Simple.yaml
@@ -1,6 +1,6 @@
 Simple:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         simple_example:
             nodes:

diff --git a/examples/MDF/States.json b/examples/MDF/States.json
@@ -1,7 +1,7 @@
 {
     "States": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "state_example": {
                 "nodes": {

diff --git a/examples/MDF/States.yaml b/examples/MDF/States.yaml
@@ -1,6 +1,6 @@
 States:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         state_example:
             nodes:

diff --git a/examples/MDF/abc_conditions.json b/examples/MDF/abc_conditions.json
@@ -1,7 +1,7 @@
 {
     "abc_conditions": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "abc_conditions_example": {
                 "nodes": {

diff --git a/examples/MDF/abc_conditions.yaml b/examples/MDF/abc_conditions.yaml
@@ -1,6 +1,6 @@
 abc_conditions:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         abc_conditions_example:
             nodes:

diff --git a/examples/MDF/conditions/Composite_mdf_condition.json b/examples/MDF/conditions/Composite_mdf_condition.json
@@ -1,7 +1,7 @@
 {
     "Composite_mdf_condition": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "Composite_mdf_condition_example": {
                 "nodes": {

diff --git a/examples/MDF/conditions/Composite_mdf_condition.yaml b/examples/MDF/conditions/Composite_mdf_condition.yaml
@@ -1,6 +1,6 @@
 Composite_mdf_condition:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         Composite_mdf_condition_example:
             nodes:

diff --git a/examples/MDF/conditions/everyncalls_condition.json b/examples/MDF/conditions/everyncalls_condition.json
@@ -1,7 +1,7 @@
 {
     "everyncalls_condition": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "everyncalls_example": {
                 "nodes": {

diff --git a/examples/MDF/conditions/everyncalls_condition.yaml b/examples/MDF/conditions/everyncalls_condition.yaml
@@ -1,6 +1,6 @@
 everyncalls_condition:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         everyncalls_example:
             nodes:

diff --git a/examples/MDF/conditions/threshold_condition.json b/examples/MDF/conditions/threshold_condition.json
@@ -1,7 +1,7 @@
 {
     "threshold_condition": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "threshold_example": {
                 "nodes": {

diff --git a/examples/MDF/conditions/threshold_condition.yaml b/examples/MDF/conditions/threshold_condition.yaml
@@ -1,6 +1,6 @@
 threshold_condition:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         threshold_example:
             nodes:

diff --git a/examples/MDF/conditions/timeinterval_condition.json b/examples/MDF/conditions/timeinterval_condition.json
@@ -1,7 +1,7 @@
 {
     "timeinterval_condition": {
         "format": "ModECI MDF v0.4",
-        "generating_application": "Python modeci-mdf v0.4.5",
+        "generating_application": "Python modeci-mdf v0.4.6",
         "graphs": {
             "timeinterval_example": {
                 "nodes": {

diff --git a/examples/MDF/conditions/timeinterval_condition.yaml b/examples/MDF/conditions/timeinterval_condition.yaml
@@ -1,6 +1,6 @@
 timeinterval_condition:
     format: ModECI MDF v0.4
-    generating_application: Python modeci-mdf v0.4.5
+    generating_application: Python modeci-mdf v0.4.6
     graphs:
         timeinterval_example:
             nodes:

diff --git a/examples/NeuroML/ABCD.1.mdf.png b/examples/NeuroML/ABCD.1.mdf.png
diff --git a/examples/NeuroML/ABCD.json b/examples/NeuroML/ABCD.json
@@ -1,6 +1,6 @@
 {
     "ABCD": {
-        "version": "NeuroMLlite v0.5.4",
+        "version": "NeuroMLlite v0.5.5",
         "notes": "Example of a simplified network",
         "parameters": {
             "A_initial": 0.1,