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Deep Interactive Viral Embedding for Subtyping of HIV-1 polymerase (pol) sequences

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DIVES

Deep Interactive Viral Embedding for Subtyping of HIV-2 pol sequences

Installation instructions

First install Pytorch Pytorch -- I used the install instructions for linux at (https://pytorch.org/get-started/locally/#linux-pip) install with: pip install torch torchvision torchaudio Then the other packages: pip install tqdm pandas scikit-learn matplotlib wandb

Running

run python simplenet.py

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Deep Interactive Viral Embedding for Subtyping of HIV-1 polymerase (pol) sequences

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  • Python 71.6%
  • Jupyter Notebook 24.0%
  • R 2.2%
  • Batchfile 1.3%
  • Shell 0.9%