FIx CI #369
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # 3 am Tuesdays and Fridays | |
| - cron: "0 3 * * 2,5" | |
| concurrency: | |
| group: "${{ github.ref }}-${{ github.head_ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: "Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macOS-latest, ubuntu-latest, windows-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.12"] | |
| env_file: [env, ] | |
| include: | |
| - name: minimum_requirements | |
| os: ubuntu-latest | |
| python-version: 3.8 | |
| env_file: min | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/conda-incubator/setup-miniconda | |
| # An environment for the minimum versions | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: devtools/conda-envs/test_${{ matrix.env_file }}.yaml | |
| channels: conda-forge, defaults | |
| activate-environment: test | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . --no-deps | |
| conda list | |
| - name: Run tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| pytest -v --cov=membrane_curvature --cov-report=xml --color=yes membrane_curvature/tests/ | |
| - name: CodeCov | |
| if: ${{ github.repository == 'MDAnalysis/membrane-curvature' | |
| && github.event_name == 'pull_request' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} | |
| fail_ci_if_error: True | |
| upstream_develop: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| latest-python : ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.latest-python }} | |
| - name: pip install membrane-curvature | |
| run: | | |
| pip install git+https://github.com/MDAnalysis/mdanalysis.git@develop#subdirectory=package | |
| python -m pip install . | |
| - name: install pytest | |
| run: | | |
| python -m pip install pytest | |
| - name: run tests | |
| run: | | |
| pytest --disable-pytest-warnings membrane_curvature/tests/ |