Merge branch 'uptuna_seeding' of https://github.com/LuisFelipeCoelho/…

…acts into uptuna_seeding
LuisFelipeCoelho · Jan 19, 2024 · 8d986ff · 8d986ff
2 parents e921735 + e734ece
commit 8d986ff
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diff --git a/.github/workflows/checks.yml b/.github/workflows/checks.yml
@@ -8,7 +8,7 @@ on:
       - 'release/**'
       - 'develop/**'
 
-concurrency: 
+concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
@@ -33,9 +33,9 @@ jobs:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - name: Install black
-        run: pip install black==22.3.0
+        run: pip install black==23.12.1
       - name: Run black format check
         run: black --check . --extend-exclude ".*thirdparty.*"
 
@@ -44,6 +44,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Check
         run: >
           sudo apt-get install -y git
@@ -53,6 +55,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Check
         run: >
           CI/check_include_guards.py . --fail-global --exclude "*thirdparty/*"
@@ -68,9 +72,21 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Check
         run: >
           CI/check_end_of_file.py . --exclude "thirdparty/*" --reject-multiple-newlines --github
+  size_t:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
+      - name: Check
+        run: >
+          CI/check_size_t.py . --exclude "thirdparty/*"
   boost_test_macro:
     runs-on: ubuntu-latest
     steps:
@@ -83,6 +99,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Check
         run: >
           CI/check_smearing_config.py .
@@ -91,6 +109,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Check
         run: >
           docs/parse_cmake_options.py CMakeLists.txt --write docs/getting_started.md --verify
@@ -99,6 +119,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Install codespell
         run: >
           pip install codespell==2.2.5
@@ -120,9 +142,21 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
       - name: Install dependencies
         run: >
           pip install -r CI/requirements_fpe_masks.txt
       - name: Check
         run: >
           CI/check_fpe_masks.py --token ${{ secrets.GITHUB_TOKEN }}
+  unused_files:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
+      - name: Check
+        run: >
+          CI/check_unused_files.py
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -8,7 +8,7 @@ on:
       - 'release/**'
       - 'develop/**'
 
-concurrency: 
+concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     env:
         DOXYGEN_WARN_AS_ERROR: FAIL_ON_WARNINGS
-        DOXYGEN_VERSION: 1.9.4
+        DOXYGEN_VERSION: 1.9.8
     steps:
       - uses: actions/checkout@v3
 
@@ -49,6 +49,7 @@ jobs:
           -W
           --keep-going
           -t run_doxygen
+          -t lazy_autodoc
           -b linkcheck
           . _build/html/
 

diff --git a/.github/workflows/iwyu.yml b/.github/workflows/iwyu.yml
@@ -55,7 +55,7 @@ jobs:
           -DACTS_BUILD_EXAMPLES_EDM4HEP=ON
 
       - name: Run IWYU
-        run: python3 iwyu-install/bin/iwyu_tool.py -p acts-build/ -j2 -- --mapping_file=acts/CI/iwyu/mapping.imp | tee iwyu-output.txt
+        run: python3 iwyu-install/bin/iwyu_tool.py -p acts-build/ -j2 -- -Xiwyu --mapping_file=$(pwd)/acts/CI/iwyu/mapping.imp | tee iwyu-output.txt
       - name: Filter IWYU output
         run: python3 acts/CI/iwyu/filter.py acts/CI/iwyu/filter.yaml iwyu-output.txt iwyu-filtered.txt
       - name: Apply IWYU

diff --git a/.github/workflows/report.yml b/.github/workflows/report.yml
@@ -57,7 +57,7 @@ jobs:
           github-token: ${{ secrets.GITHUB_TOKEN }}
           script: |
             if(!${{ steps.dl-af.outputs.result }}) {
-              console.log("No artifact => no PR numner");
+              console.log("No artifact => no PR number");
               return false;
             }
             let fs = require('fs');
@@ -86,7 +86,7 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.12'
 
       - name: Render comment
         if: steps.get-pr-number.outputs.result != 'false'

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -7,26 +7,28 @@ variables:
 clang_tidy:
   stage: build
   image: ghcr.io/acts-project/ubuntu2004:v41
+  tags:
+    - large
   artifacts:
     paths:
       - src/clang-tidy/
     when: always
-    expire_in: 2 weeks
+    expire_in: 1 week
   script:
-    - git clone $CLONE_URL src 
+    - git clone $CLONE_URL src
     - cd src
     - git checkout $HEAD_SHA
     - >
         apt-get update
-        && apt-get install -y g++-8 libstdc++-8-dev parallel software-properties-common 
+        && apt-get install -y g++-8 libstdc++-8-dev parallel software-properties-common
         && curl -L https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add
         && add-apt-repository 'deb http://apt.llvm.org/focal/ llvm-toolchain-focal-17 main'
         && apt-get install -y clang-17 clang-tidy-17
         && ln -s /usr/bin/clang++-17 /usr/bin/clang++
         && ln -s /usr/bin/clang-17 /usr/bin/clang
         && ln -s /usr/bin/clang-tidy-17 /usr/bin/clang-tidy
         && mkdir -p /opt/lib/gcc/x86_64-linux-gnu
-        && ln -s /usr/lib/gcc/x86_64-linux-gnu/8/ /opt/lib/gcc/x86_64-linux-gnu/ 
+        && ln -s /usr/lib/gcc/x86_64-linux-gnu/8/ /opt/lib/gcc/x86_64-linux-gnu/
         && clang++ --gcc-toolchain=/opt -v
     - >
         cmake -B build -S .
@@ -46,9 +48,9 @@ clang_tidy:
 
     # Parse the main clang-tidy run
     - >
-        CI/clang_tidy/parse_clang_tidy.py 
-        clang-tidy/clang-tidy.log 
-        clang-tidy/clang-tidy.json 
+        CI/clang_tidy/parse_clang_tidy.py
+        clang-tidy/clang-tidy.log
+        clang-tidy/clang-tidy.json
         --exclude "*thirdparty*"
         --exclude "*ActsPodioEdm*"
 
@@ -75,6 +77,7 @@ build_exatrkx:
     exclude:
       - build/**/*.o
       - build/bin/ActsIntegrationTest*
+    expire_in: 6 hours
 
   script:
     - export PATH=/usr/local/sbin:/usr/sbin:/sbin:$PATH
@@ -130,7 +133,7 @@ test_exatrkx_python:
     - git clone $CLONE_URL src
     - cd src
     - git checkout $HEAD_SHA
-    - pip3 install -r Examples/Python/tests/requirements.txt
+    - pip3 install -r Examples/Python/tests/requirements_ubuntu2004.txt
     - nvidia-smi
     - pytest -rFsv -k test_exatrkx
 
@@ -151,6 +154,7 @@ build_linux_ubuntu:
       - build/bin/ActsUnitTest*
       - build/bin/ActsIntegrationTest*
       - build/**/*.o
+    expire_in: 1 day
 
   script:
     - echo $PATH
@@ -170,7 +174,7 @@ build_linux_ubuntu:
       -DCMAKE_BUILD_TYPE=RelWithDebInfo
       -DCMAKE_CXX_FLAGS=-Werror
       -DCMAKE_CXX_STANDARD=17
-      -DACTS_ENABLE_LOG_FAILURE_THRESHOLD=ON 
+      -DACTS_ENABLE_LOG_FAILURE_THRESHOLD=ON
       -DACTS_BUILD_EVERYTHING=ON
       -DACTS_BUILD_ODD=ON
       -DACTS_BUILD_EXAMPLES_PYTHON_BINDINGS=ON
@@ -220,6 +224,7 @@ linux_physmon:
     when: always
     paths:
       - src/physmon
+    expire_in: 1 week
 
   script:
     - apt-get update && apt-get install -y git-lfs
@@ -277,7 +282,7 @@ linux_physmon:
       -DCMAKE_BUILD_TYPE=Release
       -DCMAKE_CXX_FLAGS=-Werror
       -DCMAKE_CXX_STANDARD=${CXXSTD}
-      -DACTS_ENABLE_LOG_FAILURE_THRESHOLD=ON 
+      -DACTS_ENABLE_LOG_FAILURE_THRESHOLD=ON
       -DACTS_BUILD_EVERYTHING=ON
       -DACTS_BUILD_ODD=ON
       -DACTS_BUILD_EXAMPLES_PYTHON_BINDINGS=ON
@@ -292,12 +297,12 @@ linux_physmon:
 
     - ctest --test-dir build -j$(nproc)
     - cmake --build build --target integrationtests
-      
+
     # Install main project
     - cmake --install build
 
     # Downstream configure
-    - > 
+    - >
       cmake -B build-downstream -S src/Tests/DownstreamProject
       -GNinja
       -DCMAKE_BUILD_TYPE=Release
@@ -343,7 +348,7 @@ linux_ubuntu_2204_clang:
   variables:
     INSTALL_DIR: ${{ github.workspace }}/install
 
-    SETUP: 
+    SETUP:
 
   cache:
     key: ccache-${CI_JOB_NAME_SLUG}-${HEAD_REF}-${CCACHE_KEY_SUFFIX}
@@ -357,27 +362,27 @@ linux_ubuntu_2204_clang:
 
     # Figure out LCG platform name based on version number and OS
     - >
-      if [ "$OS" = "alma9"  ]; then 
-        if [ "$LCG_VERSION" = "104" ]; then 
+      if [ "$OS" = "alma9"  ]; then
+        if [ "$LCG_VERSION" = "104" ]; then
           export LCG_PLATFORM="el9"
         else
           export LCG_PLATFORM="centos9"
         fi
-      else 
+      else
         export LCG_PLATFORM="$OS"
       fi
 
     - 'echo "LCG_PLATFORM: ${LCG_PLATFORM}"'
     - source /cvmfs/sft.cern.ch/lcg/views/LCG_${LCG_VERSION}/x86_64-${LCG_PLATFORM}-${COMPILER}-opt/setup.sh
-      
+
     - git clone $CLONE_URL src
 
     - cd src
     - git checkout $HEAD_SHA
     - git submodule init
     - git submodule update
     - cd ..
-    
+
     - ccache --version
 
   script:
@@ -440,18 +445,7 @@ lcg_104:
 
   parallel:
     matrix:
-      - OS: [centos7]
-        COMPILER: 
-          - gcc11
-          - gcc12
-
       - OS: [alma9]
-        COMPILER: 
-          - gcc11
-          - gcc12
+        COMPILER:
           - gcc13
           - clang16
-
-      - OS: [centos8]
-        COMPILER: [gcc11]
-
diff --git a/.merge-sentinel.yml b/.merge-sentinel.yml
@@ -4,7 +4,7 @@ rules:
       - WIP
       - milestone-set
     required_pattern:
-      - "review-required: *"
+      - "policy-bot: *"
 
   - branch_filter:
      - "main"

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,19 @@
+repos:
+  - repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: 'v14.0.0'
+    hooks:
+      - id: clang-format
+        files: ".*\\.(cpp|hpp|ipp|cu|cuh)$"
+
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v3.2.0
+    hooks:
+    - id: trailing-whitespace
+    - id: end-of-file-fixer
+    - id: check-yaml
+    - id: check-added-large-files
+
+  - repo: https://github.com/psf/black
+    rev: 23.12.1
+    hooks:
+    - id: black
diff --git a/.zenodo.json b/.zenodo.json
@@ -42,7 +42,7 @@
       "name": "Xiaocong Ai"
     },
     {
-      "affiliation": "Universitaet Freiburg",
+      "affiliation": "Universitaet Regensburg",
       "name": "Benjamin Huth"
     },
     {
@@ -113,6 +113,11 @@
       "name": "Stephen Nicholas Swatman",
       "orcid": "0000-0002-3747-3229"
     }
+    {
+      "affiliation": "CERN / TU Wien",
+      "name": "Felix Russo",
+      "orcid": "0009-0005-8975-2245"
+    }
   ],
   "access_right": "open",
   "related_identifiers": [

diff --git a/AUTHORS b/AUTHORS
@@ -15,6 +15,7 @@ The following people have contributed to the project (in alphabetical order):
 - Fabian Klimpel, CERN
 - Robert Langenberg, UMass
 - Alexander J. Pfleger, CERN, University of Graz
+- Felix Russo, CERN, TU Wien
 - Andreas Salzburger, CERN
 - Bastian Schlag, CERN, JGU Mainz
 - Andreas Stefl, CERN, TU Wien