update WGS and WES SQLite

.github/workflows/python-publish.yml

@@ -24,8 +24,8 @@ jobs:
         pip install setuptools wheel twine
     - name: Build and publish
       env:
-        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
-        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        TWINE_USERNAME: __token__
+        TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
       run: |
         python setup.py sdist bdist_wheel
         twine upload dist/*

README.md

@@ -23,7 +23,7 @@
 
 [The Genome Aggregation Database (gnomAD)](https://gnomad.broadinstitute.org) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community.
 
-This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of <100G  and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc. - [here](https://github.com/KalinNonchev/gnomAD_DB/blob/master/gnomad_db/pkgdata/gnomad_columns.yaml) you can find all selected features given the genome version). (A query containing 300.000 variants takes ~40s.)
+This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of <100G and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc. - [here](https://github.com/KalinNonchev/gnomAD_DB/blob/master/gnomad_db/pkgdata/gnomad_columns.yaml) you can find all selected features given the genome version). (A query containing 300.000 variants takes ~40s.)
 
 It extracts from a gnomAD vcf about 23 variant annotations. You can find further information about the exact fields [here](https://github.com/KalinNonchev/gnomAD_DB/blob/master/gnomad_db/pkgdata/gnomad_columns.yaml). 
 

setup.py

@@ -1,7 +1,7 @@
 from setuptools import setup, find_packages
 
 setup(name='gnomad_db',
-      version='0.1.3',
+      version='0.1.4',
       description='This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.',
       author='KalinNonchev',
       author_email='[email protected]',