"Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum a Candidate Beneficial Bacterium from the Human Microbiome" Supplemental Methods

Supplemental Methods for https://doi.org/10.1128/msystems.00425-21

This repository includes:

• Analysis files for the Prokka v1.14.6 annotation.
• Supplemental methods and output files for the Anvi'o pangenomic analysis and functional analysis of the pangenomic COG annotations.
• Supplemental methods and output files for the partitioned pangenome graph analysis performed with PPanGGOLiN.
• Supplemental methods and output files for estimation of Phylogenetic Distances.
• Supplemental methods and output files for the mash analysis performed in PanACoTA.
• Supplemental methods and intermediate files for the identification of MGEs on the Anvi'o annotations.