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54 Open 47 Closed
54 Open 47 Closed
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Issues list

picard is a requirement
#105 opened Jan 21, 2025 by jjv5
vcftools should be listed in the requirements
#104 opened Jan 21, 2025 by jjv5
bcftools 1.8 is difficult - reqork to use 1.9 or greater
#103 opened Jan 21, 2025 by jjv5
Monopogen.py somatic error
#101 opened Jan 8, 2025 by WeiZhaoLuck
Run Monopogen on other species
#100 opened Jan 2, 2025 by qiqi277
potential bias in SNVs detection？
#97 opened Dec 27, 2024 by Arsenalwins
1
cellScan error
#96 opened Dec 16, 2024 by tkcaccia
9
germline module merge multiple samples
#95 opened Dec 14, 2024 by tkcaccia
Smart-seq2?
#94 opened Dec 13, 2024 by itslittman
2
Germline analysis
#91 opened Dec 12, 2024 by tkcaccia
1
1000 genome filter
#90 opened Dec 10, 2024 by tkcaccia
1
Error in line 96
#89 opened Dec 9, 2024 by itslittman
1
How to set up the preprocessing part of the chromosome
#86 opened Nov 7, 2024 by qiqi277
4
Error while loading shared libraries: libncurses.so.5 not found
#85 opened Oct 30, 2024 by ttt-404
1
"NA" in putativeSNV.csv$LDrefine_trioLoci_score and LDrefine_merged_score
#84 opened Oct 19, 2024 by Arsenalwins
1
How to run Monopogen gremlin on R2 of 10x fastq
#82 opened Oct 14, 2024 by amirshams84
1
java.lang.OutOfMemoryError when running beagle
#79 opened Oct 8, 2024 by wkdeng
1
Questions about genotype phasing for each SNV in each cell
#75 opened Sep 10, 2024 by Li-Chengyu
2
handling chromosome X
#73 opened Aug 19, 2024 by xiaolinzhu
2
Number of Called Variants
#70 opened Jul 30, 2024 by keertikoya
1
Incorrect version of beagle when using conda install monopogen
#69 opened Jul 11, 2024 by hima-anbunathan-takara
5
Running monopogen on very large samples
#68 opened Jul 11, 2024 by aidanshoham12
Can i run Monopogen for non-tumor sample?
#67 opened Jul 8, 2024 by ZehangJiang
1
germ line module not detecting full chromosome
#65 opened Jun 23, 2024 by aidanshoham12
3
Somatic Module on multiple chromosomes
#64 opened May 31, 2024 by Arsamat
1
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