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Add tof test#52

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JoshuaSBrown wants to merge 32 commits intomasterJoshuaSBrown/MythiCaL:masterfrom add-tof-testJoshuaSBrown/MythiCaL:add-tof-testCopy head branch name to clipboard

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Commits on May 13, 2019

• Fixed inefficiency due to malformed comparitor class

  

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  a3188b0

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• Add tof test

  

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  6349538

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• Fixed crude vs coarse tests

  

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Commits on May 16, 2019

• Made performance improvements to coarsegrain algorithm

  

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Commits on May 22, 2019

• Worked on performance improvements

  

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  a79d1b1

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Commits on May 23, 2019

• Small perforamnce improvements by using const double * for rates

  

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  275ab98

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Commits on May 24, 2019

• Made minor performance improvements by using map of rates directly

  

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  18f3938

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• Added function pointers with a default

  

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Commits on May 26, 2019

• Preliminary commit for dynamicly initializing sites during run time

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Commits on May 27, 2019

• Checkpoing

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• Compiles fixed site and cluster unit tests

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Commits on May 28, 2019

• Fixed unit test for rate container

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  ac98d7a

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• Added unit test for cluster container

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• unit test for site container

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• Add graph adapter unit test

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  3842760

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• Fixed findBasin unit test

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  a64ab1e

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• Fixed first coarse graining unit test

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• Added second coarsegrain unit test

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• Remove print statements

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  acc1d0f

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• Added missing topology files

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• temporary improvement

  

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  f05fc19

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Commits on May 29, 2019

• Fixed numerical instability

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  b1a7b73

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• Fixed merge conflicts

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  e281284

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• fixed numerical stability of crude method in correlated test

  

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  7abb5a8

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• Fixed numerical stability of crude method in crude vs coarsegrain performance test

  

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  befded6

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Commits on Jun 3, 2019

• Added new performance test using correlated system

  

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  b92df56

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Commits on Jun 5, 2019

• Cleaned up tests, and fixed bug

  

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  2adc111

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Commits on Jun 6, 2019

• Fixed error in tof correlation test hopefully

  

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  f42ea86

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• Fixed rates in performance tests

  

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  1028138

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• Fixed tof regression test

  

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  f85e26d

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Commits on Jun 10, 2019

• Fixed performance tests

  

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  e19278c

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Commits on Jun 26, 2019

• add small changes

  

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