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Welcome to JianYang Lab!

We are a team of researchers focused on understanding genomic variation and its impact on human health. Our work involves developing advanced statistical methods to analyze genetic and omics data from large cohorts, with the aim of improving the diagnosis, treatment, and prevention of complex diseases.

Our research areas include genomic variation and population health, molecular mechanisms underlying complex traits and diseases, genomic risk prediction, cancer genomics, and the development of bioinformatics tools.

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  1. MeDuSA MeDuSA Public

    MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

    R 41 3

  2. gsMap gsMap Public

    Python 35 3

  3. crussmap crussmap Public

    crussmap is a faster tool to convert genome coordinates between difference reference assemblies.

    Rust 13

  4. rsam rsam Public

    Random sampler for text-based data in Rust using reservoir sampling algorithm.

    Rust 8

  5. depthmate depthmate Public

    calculate reference and alternate base depth in tumor-normal pair matched bam

    Rust 2

Repositories

Showing 7 of 7 repositories
  • gsMap Public
    JianYang-Lab/gsMap’s past year of commit activity
    Python 35 MIT 3 0 0 Updated Jan 24, 2025
  • MeDuSAJ Public
    JianYang-Lab/MeDuSAJ’s past year of commit activity
    C++ 3 0 0 0 Updated Jan 14, 2025
  • depthmate Public

    calculate reference and alternate base depth in tumor-normal pair matched bam

    JianYang-Lab/depthmate’s past year of commit activity
    Rust 2 0 0 0 Updated Dec 30, 2024
  • .github Public

    JianYang Lab

    JianYang-Lab/.github’s past year of commit activity
    1 0 0 0 Updated Dec 21, 2024
  • MeDuSA Public

    MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

    JianYang-Lab/MeDuSA’s past year of commit activity
    R 41 3 0 0 Updated Jul 9, 2024
  • crussmap Public

    crussmap is a faster tool to convert genome coordinates between difference reference assemblies.

    JianYang-Lab/crussmap’s past year of commit activity
    Rust 13 MIT 0 0 0 Updated May 4, 2023
  • rsam Public

    Random sampler for text-based data in Rust using reservoir sampling algorithm.

    JianYang-Lab/rsam’s past year of commit activity
    Rust 8 GPL-3.0 0 1 0 Updated Apr 12, 2023

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