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Merge pull request #25 from InsightSoftwareConsortium/bump-itk
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ENH: Bump ITK to v5.3rc04
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tbirdso authored May 9, 2022
2 parents ba1417c + f98ff9d commit 7c869c4
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Showing 4 changed files with 27 additions and 33 deletions.
28 changes: 11 additions & 17 deletions .github/workflows/build-test-package.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,10 @@ name: Build, test, package

on: [push,pull_request]

env:
itk-git-tag: "801370c025c7d296783481779a41c6d559c992c5"
itk-wheel-tag: "v5.3rc04"

jobs:
build-test-cxx:
runs-on: ${{ matrix.os }}
Expand All @@ -13,17 +17,14 @@ jobs:
- os: ubuntu-18.04
c-compiler: "gcc"
cxx-compiler: "g++"
itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
cmake-build-type: "MinSizeRel"
- os: windows-2019
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
cmake-build-type: "Release"
- os: macos-10.15
c-compiler: "clang"
cxx-compiler: "clang++"
itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
cmake-build-type: "MinSizeRel"

steps:
Expand All @@ -47,7 +48,7 @@ jobs:
cd ..
git clone https://github.com/InsightSoftwareConsortium/ITK.git
cd ITK
git checkout ${{ matrix.itk-git-tag }}
git checkout ${{ env.itk-git-tag }}
- name: Build ITK
if: matrix.os != 'windows-2019'
Expand Down Expand Up @@ -134,9 +135,7 @@ jobs:
strategy:
max-parallel: 2
matrix:
python-version: [36, 37, 38, 39]
include:
- itk-python-git-tag: "v5.2.0.post2"
python-version: [37, 38, 39, 310]

steps:
- uses: actions/checkout@v2
Expand All @@ -157,7 +156,7 @@ jobs:
- name: 'Build 🐍 Python 📦 package'
run: |
export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }}
./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp${{ matrix.python-version }}
- name: Publish Python package as GitHub Artifact
Expand All @@ -170,9 +169,6 @@ jobs:
runs-on: macos-10.15
strategy:
max-parallel: 2
matrix:
include:
- itk-python-git-tag: "v5.2.0.post2"

steps:
- uses: actions/checkout@v2
Expand All @@ -191,7 +187,7 @@ jobs:
- name: 'Build 🐍 Python 📦 package'
run: |
export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }}
export MACOSX_DEPLOYMENT_TARGET=10.9
./macpython-download-cache-and-build-module-wheels.sh
Expand All @@ -206,9 +202,7 @@ jobs:
strategy:
max-parallel: 2
matrix:
python-version-minor: [6, 7, 8, 9]
include:
- itk-python-git-tag: "v5.2.0.post2"
python-version-minor: [7, 8, 9, 10]

steps:
- name: Get specific version of CMake, Ninja
Expand All @@ -229,7 +223,7 @@ jobs:
run: |
mv im ../../
cd ../../
curl -L "https://github.com/InsightSoftwareConsortium/ITKPythonBuilds/releases/download/${{ matrix.itk-python-git-tag }}/ITKPythonBuilds-windows.zip" -o "ITKPythonBuilds-windows.zip"
curl -L "https://github.com/InsightSoftwareConsortium/ITKPythonBuilds/releases/download/${{ env.itk-wheel-tag }}/ITKPythonBuilds-windows.zip" -o "ITKPythonBuilds-windows.zip"
7z x ITKPythonBuilds-windows.zip -o/c/P -aoa -r
curl -L "https://data.kitware.com/api/v1/file/5c0ad59d8d777f2179dd3e9c/download" -o "doxygen-1.8.11.windows.bin.zip"
7z x doxygen-1.8.11.windows.bin.zip -o/c/P/doxygen -aoa -r
Expand All @@ -241,7 +235,7 @@ jobs:
run: |
cd ../../im
call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
set PATH="C:\P\grep;%PATH%"
set PATH=C:\P\grep;%PATH%
set CC=cl.exe
set CXX=cl.exe
C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64" --no-cleanup
Expand Down
8 changes: 4 additions & 4 deletions include/itkImageToImageOfVectorsFilter.h
Original file line number Diff line number Diff line change
Expand Up @@ -48,18 +48,18 @@ namespace itk
*
* \ingroup BSplineGradient
*/
template <typename TInputImage, unsigned int NComponents = 3>
template <typename TInputImage, unsigned int VComponents = 3>
class ITK_TEMPLATE_EXPORT ImageToImageOfVectorsFilter
: public ImageToImageFilter<
TInputImage,
Image<Vector<typename TInputImage::InternalPixelType, NComponents>, TInputImage::ImageDimension>>
Image<Vector<typename TInputImage::InternalPixelType, VComponents>, TInputImage::ImageDimension>>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(ImageToImageOfVectorsFilter);

using Superclass = ImageToImageFilter<
TInputImage,
Image<Vector<typename TInputImage::InternalPixelType, NComponents>, TInputImage::ImageDimension>>;
Image<Vector<typename TInputImage::InternalPixelType, VComponents>, TInputImage::ImageDimension>>;
using Self = ImageToImageOfVectorsFilter;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
Expand All @@ -71,7 +71,7 @@ class ITK_TEMPLATE_EXPORT ImageToImageOfVectorsFilter

using InputPixelType = typename InputImageType::InternalPixelType;

using OutputPixelType = Vector<InputPixelType, NComponents>;
using OutputPixelType = Vector<InputPixelType, VComponents>;
using OutputImageType = Image<OutputPixelType, ImageDimension>;
using RegionType = typename OutputImageType::RegionType;

Expand Down
20 changes: 10 additions & 10 deletions include/itkImageToImageOfVectorsFilter.hxx
Original file line number Diff line number Diff line change
Expand Up @@ -24,20 +24,20 @@
namespace itk
{

template <typename TInputImage, unsigned int NComponents>
ImageToImageOfVectorsFilter<TInputImage, NComponents>::ImageToImageOfVectorsFilter()
template <typename TInputImage, unsigned int VComponents>
ImageToImageOfVectorsFilter<TInputImage, VComponents>::ImageToImageOfVectorsFilter()
{
// At least 1 input is required.
this->SetNumberOfRequiredInputs(1);
}

template <typename TInputImage, unsigned int NComponents>
template <typename TInputImage, unsigned int VComponents>
void
ImageToImageOfVectorsFilter<TInputImage, NComponents>::BeforeThreadedGenerateData()
ImageToImageOfVectorsFilter<TInputImage, VComponents>::BeforeThreadedGenerateData()
{
RegionType region;

for (unsigned int i = 0; i < NComponents; i++)
for (unsigned int i = 0; i < VComponents; i++)
{
auto * input = static_cast<InputImageType *>(this->ProcessObject::GetInput(i));
if (!input)
Expand All @@ -55,9 +55,9 @@ ImageToImageOfVectorsFilter<TInputImage, NComponents>::BeforeThreadedGenerateDat
}
}

template <typename TInputImage, unsigned int NComponents>
template <typename TInputImage, unsigned int VComponents>
void
ImageToImageOfVectorsFilter<TInputImage, NComponents>::DynamicThreadedGenerateData(
ImageToImageOfVectorsFilter<TInputImage, VComponents>::DynamicThreadedGenerateData(
const RegionType & outputRegionForThread)
{
typename OutputImageType::Pointer outputImage = static_cast<OutputImageType *>(this->ProcessObject::GetOutput(0));
Expand All @@ -68,7 +68,7 @@ ImageToImageOfVectorsFilter<TInputImage, NComponents>::DynamicThreadedGenerateDa
using InputIteratorType = ImageRegionConstIterator<InputImageType>;
std::vector<InputIteratorType *> inputItContainer;

for (unsigned int i = 0; i < NComponents; i++)
for (unsigned int i = 0; i < VComponents; i++)
{
typename InputImageType::Pointer inputImagePointer =
static_cast<InputImageType *>(this->ProcessObject::GetInput(i));
Expand All @@ -81,7 +81,7 @@ ImageToImageOfVectorsFilter<TInputImage, NComponents>::DynamicThreadedGenerateDa
typename OutputImageType::PixelType pix;
while (!oit.IsAtEnd())
{
for (unsigned int i = 0; i < NComponents; i++)
for (unsigned int i = 0; i < VComponents; i++)
{
pix[i] = inputItContainer[i]->Get();
++(*inputItContainer[i]);
Expand All @@ -90,7 +90,7 @@ ImageToImageOfVectorsFilter<TInputImage, NComponents>::DynamicThreadedGenerateDa
++oit;
}

for (unsigned int i = 0; i < NComponents; i++)
for (unsigned int i = 0; i < VComponents; i++)
{
delete inputItContainer[i];
}
Expand Down
4 changes: 2 additions & 2 deletions setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@

setup(
name='itk-bsplinegradient',
version='0.2.5',
version='0.2.6',
author='Matthew McCormick',
author_email='[email protected]',
packages=['itk'],
Expand Down Expand Up @@ -46,6 +46,6 @@
keywords='ITK InsightToolkit Image-Gradient B-spline',
url=r'https://github.com/InsightSoftwareConsortium/ITKBSplineGradient',
install_requires=[
r'itk>=v5.2.0.post2'
r'itk>=v5.3rc04'
]
)

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