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INCATools · Aug 19, 2024 · c580d2d · c580d2d
1 parent 995669f
commit c580d2d
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/src/oaklib/implementations/semsimian/semsimian_implementation.py b/src/oaklib/implementations/semsimian/semsimian_implementation.py
@@ -229,15 +229,15 @@ def all_by_all_pairwise_similarity(
                             iter(ancestor_set)
                         ),  # TODO: Change this: gets first element of the set
                     )
-                    
+
                 else:
                     sim = TermPairwiseSimilarity(
                         subject_id=term1_key, object_id=term2_key, ancestor_id=OWL_THING
                     )
                 sim.jaccard_similarity = jaccard if jaccard is not None else 0.0
                 sim.ancestor_information_content = resnik if resnik is not None else 0.0
                 sim.phenodigm_score = phenodigm_score if phenodigm_score is not None else 0.0
-                
+
                 yield sim
 
     def termset_pairwise_similarity(

diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -1522,7 +1522,9 @@ def test_annotate_file(self):
             ],
         )
         print("STDERR", result.stdout)
-        err = "\n".join([line for line in result.stderr.split("\n") if not line.startswith("WARNING")])
+        err = "\n".join(
+            [line for line in result.stderr.split("\n") if not line.startswith("WARNING")]
+        )
         self.assertEqual("", err)
         self.assertEqual(0, result.exit_code)
         with open(outfile) as stream: